RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ICE2Q659A1 982 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 NAPRTQ6XQN6 538 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 TRIM72Q6ZMU5 477 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 CHSY1Q86X52 802 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 ATL2Q8NHH9 583 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 PIGOQ8TEQ8 1089 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 DAZAP1Q96EP5 407 aaKnown RBP3.81□□□□□ -1.8
NUP54-208ENST00000508604 KRTAP2-2Q9BYT5 123 aa3.81□□□□□ -1.8
NUP54-208ENST00000508604 F2RL2O00254 374 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 ADAMTS3O15072 1205 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 HTRA2O43464 458 aaPredicted RBP3.8□□□□□ -1.8
NUP54-208ENST00000508604 FGBP02675 491 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 TMEM191BP0C7N4 346 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 ENGP17813 658 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 MALP21145 153 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 SFPQP23246 707 aaKnown RBP eCLIP3.8□□□□□ -1.8
NUP54-208ENST00000508604 GCLCP48506 637 aaPredicted RBP3.8□□□□□ -1.8
NUP54-208ENST00000508604 TBC1D25Q3MII6 688 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 VPS53Q5VIR6 699 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 SLC4A10Q6U841 1118 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 LAYNQ6UX15 382 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 NOP9Q86U38 636 aaKnown RBP3.8□□□□□ -1.8
NUP54-208ENST00000508604 FAM109AQ8N4B1 249 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 C8orf58Q8NAV2 365 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 ADAMTS15Q8TE58 950 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 DDX17Q92841 729 aaKnown RBP3.8□□□□□ -1.8
NUP54-208ENST00000508604 CUL5Q93034 780 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 VRK1Q99986 396 aaPredicted RBP3.8□□□□□ -1.8
NUP54-208ENST00000508604 FAM118BQ9BPY3 351 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 GPR35Q9HC97 309 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 DUSP22Q9NRW4 184 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.8□□□□□ -1.8
NUP54-208ENST00000508604 AFG3L2Q9Y4W6 797 aa3.8□□□□□ -1.8
NUP54-208ENST00000508604 CFAP20Q9Y6A4 193 aaKnown RBP3.8□□□□□ -1.8
NUP54-208ENST00000508604 CCDC154A6NI56 674 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 KIF20AO95235 890 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 RARBP10826 455 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 ZNF134P52741 427 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 KHDC1Q4VXA5 237 aaKnown RBP3.79□□□□□ -1.8
NUP54-208ENST00000508604 TREML2Q5T2D2 321 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 KIAA1161Q6NSJ0 714 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 LHFPL2Q6ZUX7 228 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 PARS2Q7L3T8 475 aaKnown RBP3.79□□□□□ -1.8
NUP54-208ENST00000508604 CYP2W1Q8TAV3 490 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 CAMKK2Q96RR4 588 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 VPS33BQ9H267 617 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 SERHLQ9NQF3 203 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 PDGFCQ9NRA1 345 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 TUBD1Q9UJT1 453 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 IPPQ9Y573 584 aa3.79□□□□□ -1.8
NUP54-208ENST00000508604 KLHL33A6NCF5 533 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 POC1B-GALNT4F8VUJ3 575 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 UBE2Q2LH0YL09 131 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 USP1O94782 785 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 CLSTN1O94985 981 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 ARIH2O95376 493 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 PDHA1P08559 390 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 FTH1P19P0C7X4 201 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 IL1R2P27930 398 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 PIK3CGP48736 1102 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 MASP1P48740 699 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 CYP4F2P78329 520 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 KIF23Q02241 960 aaPredicted RBP3.78□□□□□ -1.8
NUP54-208ENST00000508604 C3orf36Q3SXR2 165 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 SHC4Q6S5L8 630 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 TMEM108Q6UXF1 575 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 GALNT4Q8N4A0 578 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 RP9Q8TA86 221 aaKnown RBP3.78□□□□□ -1.8
NUP54-208ENST00000508604 JADE3Q92613 823 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 KAT5Q92993 513 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 ADAMTS5Q9UNA0 930 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 LIMCH1Q9UPQ0 1083 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 POLHQ9Y253 713 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 MRFAP1Q9Y605 127 aa3.78□□□□□ -1.8
NUP54-208ENST00000508604 E5RJQ4 531 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 H7C1Q1 480 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 DSCR3O14972 297 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 XPOTO43592 962 aaKnown RBP3.78□□□□□ -1.81
NUP54-208ENST00000508604 BCAR3O75815 825 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 IL6RP08887 468 aaPredicted RBP3.78□□□□□ -1.81
NUP54-208ENST00000508604 C5AR1P21730 350 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 CLCN2P51788 898 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 SNAPC2Q13487 334 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 TWIST1Q15672 202 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 Q4G0T1 1027 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 ABHD11Q8NFV4 315 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 FSD1LQ9BXM9 530 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 TINAGL1Q9GZM7 467 aaPredicted RBP3.78□□□□□ -1.81
NUP54-208ENST00000508604 GLOD4Q9HC38 313 aa3.78□□□□□ -1.81
NUP54-208ENST00000508604 FNDC1Q4ZHG4 1894 aaPredicted RBP3.77□□□□□ -1.81
NUP54-208ENST00000508604 CACNA1IQ9P0X4 2223 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 CCDC187A0A096LP49 1063 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 FAM90A10PA6NDY2 464 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 CHRM5P08912 532 aaPredicted RBP3.77□□□□□ -1.81
NUP54-208ENST00000508604 DLDP09622 509 aaKnown RBP3.77□□□□□ -1.81
NUP54-208ENST00000508604 LIPAP38571 399 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 KCNJ5P48544 419 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 TPTEP56180 551 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 GPSM2P81274 684 aa3.77□□□□□ -1.81
NUP54-208ENST00000508604 KIF22Q14807 665 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms