RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 TMPRSS9Q7Z410 1059 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 WDR53Q7Z5U6 358 aaPredicted RBP2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 DCBLD1Q8N8Z6 715 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 SLC17A8Q8NDX2 589 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 WDR66Q8TBY9 1149 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 IFI44Q8TCB0 444 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 ATRIPQ8WXE1 791 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 HDAC10Q969S8 669 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 FKBP10Q96AY3 582 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 C5orf34Q96MH7 638 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 KLHL32Q96NJ5 620 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 OSBPL9Q96SU4 736 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 SMOQ99835 787 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 NOTCH2Q04721 2471 aa2.74□□□□□ -1.97
HMGB3P17-201ENST00000504195 A0A0B4J269 797 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 LY6G6EA0A0G2JKS1 128 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 F5H697 171 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 GTPBP1O00178 669 aaKnown RBP2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 SGTAO43765 313 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 ABLIM3O94929 683 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 ANXA1P04083 346 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 SBK3P0C264 359 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 CNGA1P29973 690 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 SLC16A1P53985 500 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 HOXA4Q00056 320 aaPredicted RBP2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 TARDBPQ13148 414 aaKnown RBP eCLIP2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 KLF1Q13351 362 aaPredicted RBP2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 TUBB3Q13509 450 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 RAB39AQ14964 217 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 RBMS2Q15434 407 aaKnown RBP2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 RNF219Q5W0B1 726 aaPredicted RBP2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 GADL1Q6ZQY3 521 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 NSUN7Q8NE18 718 aaKnown RBP2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 TMIEQ8NEW7 156 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 CUL5Q93034 780 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 RAB24Q969Q5 203 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 TRIB1Q96RU8 372 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 TPSD1Q9BZJ3 242 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 SLCO5A1Q9H2Y9 848 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 POT1Q9NUX5 634 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 VSX1Q9NZR4 365 aaPredicted RBP2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 PCDHA13Q9Y5I0 950 aa2.73□□□□□ -1.97
HMGB3P17-201ENST00000504195 TRIM75PA6NK02 468 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 K7ESF4 209 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 QSOX1O00391 747 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 POLRMTO00411 1230 aaKnown RBP2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 ZNF213O14771 459 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 SOAT2O75908 522 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 EYA4O95677 639 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 IGKV3-20P01619 116 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 RPLP2P05387 115 aaKnown RBP2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 IL1R2P27930 398 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 MASP1P48740 699 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 ERVK-21P61565 698 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 LEXMQ3ZCV2 418 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 CERKLQ49MI3 558 aaPredicted RBP2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 PPP4R3AQ6IN85 833 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 LHFPL2Q6ZUX7 228 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 CHSY1Q86X52 802 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 PNLDC1Q8NA58 520 aaKnown RBP2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 COG1Q8WTW3 980 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 PKNOX2Q96KN3 472 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 CAMKK2Q96RR4 588 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 MAN1C1Q9NR34 630 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 PDGFCQ9NRA1 345 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 CALCOCO1Q9P1Z2 691 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 BCCIPQ9P287 314 aaKnown RBP eCLIP2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 NIPSNAP3AQ9UFN0 247 aaPredicted RBP2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 SLC45A2Q9UMX9 530 aa2.72□□□□□ -1.97
HMGB3P17-201ENST00000504195 NTN3O00634 580 aaPredicted RBP2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 RHOP08100 348 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 GNAI3P08754 354 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 ATP5F1P24539 256 aaPredicted RBP2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 HSD3B2P26439 372 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 NDUFV1P49821 464 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 EEFSECP57772 596 aaKnown RBP2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 ZNF280AP59817 542 aaPredicted RBP2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 GNAI1P63096 354 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 ACAP2Q15057 778 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 TBCCQ15814 346 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 FLYWCH1Q4VC44 716 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 C9orf50Q5SZB4 431 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 C10orf25Q5T742 122 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 ZNF618Q5T7W0 954 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 PIM3Q86V86 326 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 PDSS2Q86YH6 399 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 ATL2Q8NHH9 583 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 POC1BQ8TC44 478 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 SCAMP4Q969E2 229 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 LRIG1Q96JA1 1093 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 CLPTM1LQ96KA5 538 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 ACTRT3Q9BYD9 372 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 BRD9Q9H8M2 597 aa2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 GNL3LQ9NVN8 582 aaKnown RBP2.71□□□□□ -1.98
HMGB3P17-201ENST00000504195 TTC3P53804 2025 aa2.7□□□□□ -1.98
HMGB3P17-201ENST00000504195 POC1B-GALNT4F8VUJ3 575 aa2.7□□□□□ -1.98
HMGB3P17-201ENST00000504195 H7C1Q1 480 aa2.7□□□□□ -1.98
HMGB3P17-201ENST00000504195 DSCR3O14972 297 aa2.7□□□□□ -1.98
HMGB3P17-201ENST00000504195 NDUFS2O75306 463 aa2.7□□□□□ -1.98
HMGB3P17-201ENST00000504195 USP1O94782 785 aa2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms