RNA–Protein interactions for RNA: ENST00000496946.1

SNRNP48-202, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

TSL 2

Gene SNRNP48, Length 2,610 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-202ENST00000496946 MAPKAPK2P49137 400 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 OLR1P78380 273 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 CCNA1P78396 465 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 NIPAL4Q0D2K0 466 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 HSPA14Q0VDF9 509 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 PRKG1Q13976 671 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 PPA1Q15181 289 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 INSCQ1MX18 579 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 FBXO43Q4G163 708 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 KRBOX4Q5JUW0 171 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 LCE4AQ5TA78 99 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 TLDC1Q6P9B6 456 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 SHQ1Q6PI26 577 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 LRSAM1Q6UWE0 723 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 ATG14Q6ZNE5 492 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 PLEKHM3Q6ZWE6 761 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 FASTKD5Q7L8L6 764 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 GATAD2AQ86YP4 633 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 EPHX4Q8IUS5 362 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 ANKRD53Q8N9V6 530 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 IL17RDQ8NFM7 739 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 CEP70Q8NHQ1 597 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 FBXO30Q8TB52 745 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 HERVK_113Q902F9 699 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 COPS5Q92905 334 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 CDCA5Q96FF9 252 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 PPM1MQ96MI6 270 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 PTCHD1Q96NR3 888 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 SCPEP1Q9HB40 452 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 CRLF2Q9HC73 371 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 NKIRAS2Q9NYR9 191 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 EHD2Q9NZN4 543 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 PDP2Q9P2J9 529 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 ATXN10Q9UBB4 475 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 CIDEBQ9UHD4 219 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 DDX20Q9UHI6 824 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 RASAL2Q9UJF2 1139 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 ZBTB21Q9ULJ3 1066 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 L1RE1Q9UN81 338 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 CAB39Q9Y376 341 aaPredicted RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 RRP7AQ9Y3A4 280 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 MSRB2Q9Y3D2 182 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 MAP3K19Q56UN5 1328 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 A0A1B0GTL3 188 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 A0A1W2PQU0 124 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 E2F8A0AVK6 867 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 TRIM43BA6NCK2 446 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 LIN7AO14910 233 aaPredicted RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 WDR46O15213 610 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 MAPK13O15264 365 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 ATP5BP06576 529 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 PDHA1P08559 390 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 SNRPB2P08579 225 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 EZRP15311 586 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 DDX5P17844 614 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 NFKBIAP25963 317 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 PTGS2P35354 604 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 PSMC2P35998 433 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 AFMP43652 599 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 GPC3P51654 580 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 AP3M2P53677 418 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 ZNF280AP59817 542 aaPredicted RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 RPP38P78345 283 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 CYP4F8P98187 520 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 IFIT5Q13325 482 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 Q3ZCU0 254 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 KLC3Q6P597 504 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 RNF111Q6ZNA4 994 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 MRPL10Q7Z7H8 261 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 AFAP1L2Q8N4X5 818 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 SHC3Q92529 594 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 KIFAP3Q92845 792 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 PEX13Q92968 403 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 NINJ1Q92982 152 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 ZKSCAN4Q969J2 545 aaPredicted RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 NLRP4Q96MN2 994 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 SIN3AQ96ST3 1273 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 FSD1Q9BTV5 496 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 ISCA1Q9BUE6 129 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 CRB3Q9BUF7 120 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 LSM14BQ9BX40 385 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 JAM3Q9BX67 310 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 SIL1Q9H173 461 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 ADNPQ9H2P0 1102 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 ARHGEF4Q9NR80 690 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 SDHAF3Q9NRP4 125 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 FARSBQ9NSD9 589 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 MCM9Q9NXL9 1143 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 GALNT8Q9NY28 637 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 EIF2B4Q9UI10 523 aaKnown RBP3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 RCAN3Q9UKA8 241 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 TRHDEQ9UKU6 1024 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 DDX19BQ9UMR2 479 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 CLEC4AQ9UMR7 237 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 COG5Q9UP83 839 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 EMC9Q9Y3B6 208 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 ASXL2Q76L83 1435 aa3.31□□□□□ -1.88
SNRNP48-202ENST00000496946 GPR75-ASB3A0A0A6YYF3 556 aa3.3□□□□□ -1.88
SNRNP48-202ENST00000496946 A0A1W2PQ27 194 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms