RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 CHD9Q3L8U1 2897 aa20.6■□□□□ 0.89
USP39-218ENST00000493829 MYBPHLA2RUH7 354 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 FAM163BP0C2L3 166 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 CHRNB2P17787 502 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 PLCB3Q01970 1234 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 CYP27A1Q02318 531 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 GOLGA7BQ2TAP0 167 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 PPP1R26Q5T8A7 1209 aaPredicted RBP20.59■□□□□ 0.89
USP39-218ENST00000493829 RSPO2Q6UXX9 243 aaPredicted RBP20.59■□□□□ 0.89
USP39-218ENST00000493829 ANKS3Q6ZW76 656 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 PALB2Q86YC2 1186 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 LNX1Q8TBB1 728 aaPredicted RBP20.59■□□□□ 0.89
USP39-218ENST00000493829 SPATA18Q8TC71 538 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 ZNF606Q8WXB4 792 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 ARNTL2Q8WYA1 636 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 DDX1Q92499 740 aaKnown RBP20.59■□□□□ 0.89
USP39-218ENST00000493829 ACBD6Q9BR61 282 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 SPTLC3Q9NUV7 552 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 TMLHEQ9NVH6 421 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 LAMA3Q16787 3333 aa20.59■□□□□ 0.89
USP39-218ENST00000493829 CLDN5O00501 218 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 VDRP11473 427 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 CPB1P15086 417 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 FECHP22830 423 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 FMO1Q01740 532 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 CDR2Q01850 454 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 SLC39A12Q504Y0 691 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 RAD9BQ6WBX8 426 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 CRYBG2Q8N1P7 616 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 CCDC112Q8NEF3 446 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 FBXO22Q8NEZ5 403 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 SLC2A14Q8TDB8 520 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 MYLPFQ96A32 169 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 CCDC42Q96M95 316 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 MED10Q9BTT4 135 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 C11orf84Q9BUA3 381 aaPredicted RBP20.58■□□□□ 0.89
USP39-218ENST00000493829 PLVAPQ9BX97 442 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 RHOBTB2Q9BYZ6 727 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 DNAI2Q9GZS0 605 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 ZBP1Q9H171 429 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 SLC28A3Q9HAS3 691 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 ENTPD7Q9NQZ7 604 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 CHST7Q9NS84 486 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 PCDHGC5Q9Y5F6 944 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 BZW2Q9Y6E2 419 aaKnown RBP20.58■□□□□ 0.89
USP39-218ENST00000493829 CDY1Q9Y6F8 540 aa20.58■□□□□ 0.89
USP39-218ENST00000493829 H7C4K7 107 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 M0QYV0 167 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 ADAM12O43184 909 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 AKR1B10O60218 316 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 TNFAIP3P21580 790 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 DNAJB1P25685 340 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 KIF11P52732 1056 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 ERVK-21P61565 698 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 DSG1Q02413 1049 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 GFPT1Q06210 699 aaPredicted RBP20.58■□□□□ 0.88
USP39-218ENST00000493829 MRPL58Q14197 206 aaKnown RBP20.58■□□□□ 0.88
USP39-218ENST00000493829 LRRTM3Q86VH5 581 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 TMTC1Q8IUR5 882 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 OLIG1Q8TAK6 271 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 POF1BQ8WVV4 589 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 PIK3R5Q8WYR1 880 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 CYFIP2Q96F07 1278 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 PGLYRP2Q96PD5 576 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 TCF25Q9BQ70 676 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 SYT11Q9BT88 431 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 ADAMTS1Q9UHI8 967 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 TSPAN16Q9UKR8 245 aa20.58■□□□□ 0.88
USP39-218ENST00000493829 COL4A4P53420 1690 aaPredicted RBP20.57■□□□□ 0.88
USP39-218ENST00000493829 TMCO5BA8MYB1 307 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 C5orf67F2Z3F1 127 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 O00370 1275 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 GRM6O15303 877 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 MED7O43513 233 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 NRDCO43847 1150 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 MICAL2O94851 1124 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 CDK17Q00537 523 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 PLPP4Q5VZY2 271 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 DENND1BQ6P3S1 775 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 TMC7Q7Z402 723 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 DNAAF5Q86Y56 855 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 UBA3Q8TBC4 463 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 TIFAQ96CG3 184 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 PCED1BQ96HM7 432 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 PCDHB18PQ96TA0 734 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 ZCWPW1Q9H0M4 648 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 MRPL17Q9NRX2 175 aaKnown RBP20.57■□□□□ 0.88
USP39-218ENST00000493829 MTRRQ9UBK8 725 aa20.57■□□□□ 0.88
USP39-218ENST00000493829 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.57■□□□□ 0.88
USP39-218ENST00000493829 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.57■□□□□ 0.882e-8■■■□□ 16.1
USP39-218ENST00000493829 CHD7Q9P2D1 2997 aa20.56■□□□□ 0.88
USP39-218ENST00000493829 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.56■□□□□ 0.88
USP39-218ENST00000493829 OR6C75A6NL08 312 aa20.56■□□□□ 0.88
USP39-218ENST00000493829 DDX3XO00571 662 aaKnown RBP eCLIP20.56■□□□□ 0.889e-13■■■■□ 21.9
USP39-218ENST00000493829 ERVFC1P60507 584 aa20.56■□□□□ 0.88
USP39-218ENST00000493829 MAPK8IP2Q13387 824 aaPredicted RBP20.56■□□□□ 0.88
USP39-218ENST00000493829 PTPN14Q15678 1187 aa20.56■□□□□ 0.88
USP39-218ENST00000493829 VPS36Q86VN1 386 aa20.56■□□□□ 0.88
USP39-218ENST00000493829 MYCBPAPQ8TBZ2 947 aa20.56■□□□□ 0.88
USP39-218ENST00000493829 SPPL3Q8TCT6 385 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms