RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 CYB561D2O14569 222 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 EIF3DO15371 548 aaKnown RBP eCLIP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 ATP8B1O43520 1251 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 AMHP03971 560 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 POLBP06746 335 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 KCNK10P57789 538 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 ORC1Q13415 861 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 CYTH1Q15438 398 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 CLEC16AQ2KHT3 1053 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 ZC2HC1CQ53FD0 456 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 NOL9Q5SY16 702 aaKnown RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 LRRC8BQ6P9F7 803 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 MTSS1LQ765P7 747 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 CYGBQ8WWM9 190 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 NMRK1Q9NWW6 199 aa13.68□□□□□ -0.22
COL6A3-212ENST00000491769 UTP6Q9NYH9 597 aaKnown RBP13.68□□□□□ -0.22
COL6A3-212ENST00000491769 IYDQ6PHW0 289 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 ADCK1Q86TW2 530 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 PLD3Q8IV08 490 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 WWP1Q9H0M0 922 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 MSRAQ9UJ68 235 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 NCKAP1Q9Y2A7 1128 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 SLC12A8A0AV02 714 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 SERPINB4P48594 390 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 SEZ6Q53EL9 994 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 FGD2Q7Z6J4 655 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 FAR2Q96K12 515 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 RNPC3Q96LT9 517 aaKnown RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 ZNF229Q9UJW7 825 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 COPG1Q9Y678 874 aaKnown RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 H0YC42 278 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 ALDH2P05091 517 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 RHOCP08134 193 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 YWHAQP27348 245 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 RHOAP61586 193 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 YWHAZP63104 245 aaKnown RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 USP39Q53GS9 565 aaKnown RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 KAT2BQ92831 832 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 ISCA1Q9BUE6 129 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 MARCOQ9UEW3 520 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 CLASP1Q7Z460 1538 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 GRID2IPA4D2P6 1211 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 APOA1P02647 267 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 ANXA11P50995 505 aaKnown RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 ZNF512BQ96KM6 892 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 DDX28Q9NUL7 540 aaKnown RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 MAP3K4Q9Y6R4 1608 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 IFRD1O00458 451 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 SKAP2O75563 359 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 KRT16P08779 473 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 PLIN5Q00G26 463 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 CCDC60Q8IWA6 550 aaPredicted RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 CENPTQ96BT3 561 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 TMEM245Q9H330 911 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 PPIEQ9UNP9 301 aaKnown RBP13.67□□□□□ -0.22
COL6A3-212ENST00000491769 CHMP2BQ9UQN3 213 aa13.67□□□□□ -0.22
COL6A3-212ENST00000491769 CASTOR2A6NHX0 329 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 NDUFS2O75306 463 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 SOAT2O75908 522 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 SPRP35270 261 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-212ENST00000491769 PTGER2P43116 358 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 RIN3Q8TB24 985 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 WNK4Q96J92 1243 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 TRABDQ9H4I3 376 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 RNF112Q9ULX5 631 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 PCDHGA4Q9Y5G9 962 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 PPP2R2AP63151 447 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 HIC1Q14526 733 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 PTPAQ15257 358 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 NAPEPLDQ6IQ20 393 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 FOXR1Q6PIV2 292 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 TARS2Q9BW92 718 aaKnown RBP13.66□□□□□ -0.22
COL6A3-212ENST00000491769 GID8Q9NWU2 228 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 IGSF9BQ9UPX0 1349 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 TCN1P20061 433 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-212ENST00000491769 FGFR2P21802 821 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 GCLCP48506 637 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-212ENST00000491769 PRKAA1Q13131 559 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 MKRN4PQ13434 485 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-212ENST00000491769 ARMC2Q8NEN0 867 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 SLC35G2Q8TBE7 412 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 SPIRE2Q8WWL2 714 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 VEGFAP15692 232 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-212ENST00000491769 FMO5P49326 533 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 RCAN1P53805 252 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 HLA-DQA1Q5Y7H0 255 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 RPAINQ86UA6 219 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 MYO1CO00159 1063 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 VPS26AO75436 327 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 STX3Q13277 289 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 MTM1Q13496 603 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 SHROOM1Q2M3G4 852 aaPredicted RBP13.66□□□□□ -0.22
COL6A3-212ENST00000491769 ZNF280DQ6N043 979 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 MIER2Q8N344 545 aa13.66□□□□□ -0.22
COL6A3-212ENST00000491769 AGBL3Q8NEM8 1001 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 NIF3L1Q9GZT8 377 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 MYO5CQ9NQX4 1742 aa13.65□□□□□ -0.22
COL6A3-212ENST00000491769 MRPS15P82914 257 aaKnown RBP13.65□□□□□ -0.22
COL6A3-212ENST00000491769 LAYNQ6UX15 382 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms