RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 ZNF197O14709 1029 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 PHACTR2O75167 634 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 LRRN2O75325 713 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 STAU1O95793 577 aaKnown RBP19.41■□□□□ 0.7
COL9A3-214ENST00000490398 SRFP11831 508 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 CD44P16070 742 aaKnown RBP19.41■□□□□ 0.7
COL9A3-214ENST00000490398 BMP6P22004 513 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 TUFMP49411 452 aaKnown RBP19.41■□□□□ 0.7
COL9A3-214ENST00000490398 PPP3CAQ08209 521 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 ZACNQ401N2 412 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 SPOPLQ6IQ16 392 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 FAM171BQ6P995 826 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 SV2AQ7L0J3 742 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 FAM186BQ8IYM0 893 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 FAM200AQ8TCP9 573 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 TMC2Q8TDI7 906 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 C2orf15Q8WU43 125 aaKnown RBP19.41■□□□□ 0.7
COL9A3-214ENST00000490398 RSPRY1Q96DX4 576 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 GSDMAQ96QA5 445 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 MKNK1Q9BUB5 465 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 RMND1Q9NWS8 449 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 GDE1Q9NZC3 331 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 CA14Q9ULX7 337 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 FRMD4BQ9Y2L6 1034 aa19.41■□□□□ 0.7
COL9A3-214ENST00000490398 MICAL2O94851 1124 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 SMC2O95347 1197 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 HMGA1P17096 107 aaKnown RBP19.4■□□□□ 0.7
COL9A3-214ENST00000490398 GABRR2P28476 465 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 VIPR2P41587 438 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 GCLMP48507 274 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 VAMP7P51809 220 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 TNNC1P63316 161 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 CYP4F8P98187 520 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 CWF19L1Q69YN2 538 aaKnown RBP19.4■□□□□ 0.7
COL9A3-214ENST00000490398 ANKRD40Q6AI12 368 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 SCARA5Q6ZMJ2 495 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 MTSS1LQ765P7 747 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 ADSSL1Q8N142 457 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 SIX5Q8N196 739 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 SPATA18Q8TC71 538 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 MYLPFQ96A32 169 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 CCDC34Q96HJ3 373 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 ASB16Q96NS5 453 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 ZNF318Q5VUA4 2279 aa19.4■□□□□ 0.7
COL9A3-214ENST00000490398 MAPK13O15264 365 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 KINO60870 393 aaKnown RBP19.39■□□□□ 0.69
COL9A3-214ENST00000490398 TACC1O75410 805 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 PCSK1P29120 753 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 ATICP31939 592 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 GNL1P36915 607 aaPredicted RBP19.39■□□□□ 0.69
COL9A3-214ENST00000490398 AP3M2P53677 418 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 SMARCB1Q12824 385 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 NFE2Q16621 373 aaPredicted RBP19.39■□□□□ 0.69
COL9A3-214ENST00000490398 ZNF699Q32M78 642 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 COBLL1Q53SF7 1204 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 TMEM150AQ86TG1 271 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 ELOA2Q8IYF1 753 aaPredicted RBP19.39■□□□□ 0.69
COL9A3-214ENST00000490398 TMEM105Q8N8V8 129 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 OR6B3Q8NGW1 331 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 SYAP1Q96A49 352 aaPredicted RBP19.39■□□□□ 0.69
COL9A3-214ENST00000490398 MMRN2Q9H8L6 949 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 VRTNQ9H8Y1 702 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 FBXL21Q9UKT6 434 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 CDH9Q9ULB4 789 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 ASB3Q9Y575 518 aa19.39■□□□□ 0.69
COL9A3-214ENST00000490398 MYO15AQ9UKN7 3530 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 PI15O43692 258 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 ECI2O75521 394 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 HLA-DRAP01903 254 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 AVPR2P30518 371 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 PSMC2P35998 433 aaKnown RBP19.38■□□□□ 0.69
COL9A3-214ENST00000490398 ANP32AP39687 249 aaKnown RBP19.38■□□□□ 0.69
COL9A3-214ENST00000490398 CACNA2D1P54289 1103 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 GRM2Q14416 872 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 EDRF1Q3B7T1 1238 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 MDH1BQ5I0G3 518 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 SPATA2LQ8IUW3 424 aaPredicted RBP19.38■□□□□ 0.69
COL9A3-214ENST00000490398 SUGP1Q8IWZ8 645 aaKnown RBP19.38■□□□□ 0.69
COL9A3-214ENST00000490398 ZC3H3Q8IXZ2 948 aaKnown RBP19.38■□□□□ 0.69
COL9A3-214ENST00000490398 LEMD2Q8NC56 503 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 FLCNQ8NFG4 579 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 ZSCAN18Q8TBC5 510 aaPredicted RBP19.38■□□□□ 0.69
COL9A3-214ENST00000490398 TAS1R2Q8TE23 839 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 SNX25Q9H3E2 840 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 ATXN3LQ9H3M9 355 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 SLC2A4RGQ9NR83 387 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 TMEM30AQ9NV96 361 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 WNT16Q9UBV4 365 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 HCN4Q9Y3Q4 1203 aa19.38■□□□□ 0.69
COL9A3-214ENST00000490398 MUC6Q6W4X9 2439 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 BIN1O00499 593 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 IKBKBO14920 756 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 BDNFP23560 247 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 RPL13P26373 211 aaKnown RBP19.37■□□□□ 0.69
COL9A3-214ENST00000490398 MCCD1P59942 119 aaPredicted RBP19.37■□□□□ 0.69
COL9A3-214ENST00000490398 ORC1Q13415 861 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 CFAP221Q4G0U5 840 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 VITQ6UXI7 678 aa19.37■□□□□ 0.69
COL9A3-214ENST00000490398 INTS8Q75QN2 995 aaKnown RBP19.37■□□□□ 0.69
COL9A3-214ENST00000490398 ITIH5Q86UX2 942 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms