RNA–Protein interactions for RNA: ENST00000490099.5

TMEM39A-210, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-210ENST00000490099 TASP1Q9H6P5 420 aa10.46□□□□□ -0.73
TMEM39A-210ENST00000490099 SCUBE2Q9NQ36 999 aa10.46□□□□□ -0.73
TMEM39A-210ENST00000490099 HEBP1Q9NRV9 189 aa10.46□□□□□ -0.73
TMEM39A-210ENST00000490099 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.46□□□□□ -0.73
TMEM39A-210ENST00000490099 CGNQ9P2M7 1197 aaKnown RBP10.46□□□□□ -0.73
TMEM39A-210ENST00000490099 ZMYM5Q9UJ78 669 aa10.46□□□□□ -0.73
TMEM39A-210ENST00000490099 L1RE1Q9UN81 338 aa10.46□□□□□ -0.73
TMEM39A-210ENST00000490099 HPSEQ9Y251 543 aa10.46□□□□□ -0.73
TMEM39A-210ENST00000490099 UBE4BO95155 1302 aa10.46□□□□□ -0.73
TMEM39A-210ENST00000490099 MAN2B1O00754 1011 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 CHADO15335 359 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 ACTN4O43707 911 aaKnown RBP10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 F11P03951 625 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 SP9P0CG40 484 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 CD72P21854 359 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 TARSP26639 723 aaKnown RBP10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 GABRR2P28476 465 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 CASP1P29466 404 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 ME1P48163 572 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 LHX1P48742 406 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 CUL4BQ13620 913 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 GRM2Q14416 872 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 PSMD6Q15008 389 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 CFAP221Q4G0U5 840 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 STXBP5Q5T5C0 1151 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 TPRG1Q6ZUI0 275 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 OSTM1Q86WC4 334 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 NKD2Q969F2 451 aaPredicted RBP10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 SLC46A2Q9BY10 475 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 BCO2Q9BYV7 579 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 MTMR12Q9C0I1 747 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 BRD9Q9H8M2 597 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 DMAC2Q9NW81 257 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 FAM13BQ9NYF5 915 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 USP25Q9UHP3 1055 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 FBXO4Q9UKT5 387 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 MRPS17Q9Y2R5 130 aaKnown RBP10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 PCDHB5Q9Y5E4 795 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 FANCMQ8IYD8 2048 aa10.45□□□□□ -0.74
TMEM39A-210ENST00000490099 COL4A2P08572 1712 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 COL4A3Q01955 1670 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 ZNF263O14978 683 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 HUS1O60921 280 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 NOL4O94818 638 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 STAU1O95793 577 aaKnown RBP10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 CST3P01034 146 aaPredicted RBP10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 CDC25CP30307 473 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 GDI1P31150 447 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 ANP32AP39687 249 aaKnown RBP10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 NLRP12P59046 1061 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 CYP24A1Q07973 514 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 SNRNP35Q16560 246 aaKnown RBP10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 KNOP1Q1ED39 458 aaKnown RBP10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 MGAT5BQ3V5L5 792 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 INTS6LQ5JSJ4 861 aaKnown RBP10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 TRAPPC11Q7Z392 1133 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 SLC9A9Q8IVB4 645 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 XXYLT1Q8NBI6 393 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 KBTBD7Q8WVZ9 684 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 ZNF516Q92618 1163 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 TRMT2BQ96GJ1 504 aaKnown RBP10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 PAGE5Q96GU1 130 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 FUBP3Q96I24 572 aaKnown RBP eCLIP10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 HPDLQ96IR7 371 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 CEP295NLQ96MC4 621 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 SEPT5Q99719 369 aaPredicted RBP10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 LPIN3Q9BQK8 851 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 BLZF1Q9H2G9 400 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 DDX43Q9NXZ2 648 aaKnown RBP10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 SNX9Q9Y5X1 595 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 ZNF292O60281 2723 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 USP34Q70CQ2 3546 aa10.44□□□□□ -0.74
TMEM39A-210ENST00000490099 SPTBN4Q9H254 2564 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 MYBPHLA2RUH7 354 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 NCAM2O15394 837 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 PRPF40AO75400 957 aaKnown RBP10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 TACC1O75410 805 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 PRAMEF12O95522 483 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 MYL1P05976 194 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 HSP90AA1P07900 732 aaKnown RBP10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 CHRNB1P11230 501 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 TDGF1P13385 188 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 RFX1P22670 979 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 WARSP23381 471 aaKnown RBP10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 CYP2F1P24903 491 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 LMO2P25791 158 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 PCSK1P29120 753 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 MAGEA11P43364 429 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 MCCD1P59942 119 aaPredicted RBP10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 MYL7Q01449 175 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 TSPY1Q01534 308 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 BFSP1Q12934 665 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 MYO1EQ12965 1108 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 STK4Q13043 487 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 PSMD2Q13200 908 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 UBXN2BQ14CS0 331 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 VEPH1Q14D04 833 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 FOXD4L6Q3SYB3 417 aaPredicted RBP10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 WDR44Q5JSH3 913 aa10.43□□□□□ -0.74
TMEM39A-210ENST00000490099 GPR158Q5T848 1215 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms