RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 FAM84AQ96KN4 292 aa21.24■□□□□ 0.99
COL9A3-210ENST00000472880 ACBD6Q9BR61 282 aa21.24■□□□□ 0.99
COL9A3-210ENST00000472880 SLC46A2Q9BY10 475 aa21.24■□□□□ 0.99
COL9A3-210ENST00000472880 MTMR12Q9C0I1 747 aa21.24■□□□□ 0.99
COL9A3-210ENST00000472880 SMG9Q9H0W8 520 aaKnown RBP21.24■□□□□ 0.99
COL9A3-210ENST00000472880 PDE11AQ9HCR9 933 aa21.24■□□□□ 0.99
COL9A3-210ENST00000472880 MAGED2Q9UNF1 606 aaPredicted RBP21.24■□□□□ 0.99
COL9A3-210ENST00000472880 SNX9Q9Y5X1 595 aa21.24■□□□□ 0.99
COL9A3-210ENST00000472880 CSH1P0DML2 217 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 CSH2P0DML3 217 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 ACAT1P24752 427 aaKnown RBP21.23■□□□□ 0.99
COL9A3-210ENST00000472880 DDX6P26196 483 aaKnown RBP eCLIP21.23■□□□□ 0.99
COL9A3-210ENST00000472880 NLRP12P59046 1061 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 RBP5P82980 135 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 INTS6LQ5JSJ4 861 aaKnown RBP21.23■□□□□ 0.99
COL9A3-210ENST00000472880 DGKKQ5KSL6 1271 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 TXNDC11Q6PKC3 985 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 SPEM1Q8N4L4 309 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 GPR161Q8N6U8 529 aaKnown RBP21.23■□□□□ 0.99
COL9A3-210ENST00000472880 LINC00301Q8NCQ3 95 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 SPATA18Q8TC71 538 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 MRPS31Q92665 395 aaKnown RBP21.23■□□□□ 0.99
COL9A3-210ENST00000472880 ANKRD36BP1Q96IX9 119 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 CUEDC2Q9H467 287 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 ABCB6Q9NP58 842 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 RBM12Q9NTZ6 932 aaKnown RBP21.23■□□□□ 0.99
COL9A3-210ENST00000472880 GDAP2Q9NXN4 497 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 GMEB2Q9UKD1 530 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 RAB23Q9ULC3 237 aa21.23■□□□□ 0.99
COL9A3-210ENST00000472880 KIF26AQ9ULI4 1882 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-210ENST00000472880 SPTLC2O15270 562 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 HMGA1P17096 107 aaKnown RBP21.22■□□□□ 0.99
COL9A3-210ENST00000472880 GPR15P49685 360 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 RPL10AP62906 217 aaKnown RBP21.22■□□□□ 0.99
COL9A3-210ENST00000472880 TNK2Q07912 1038 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 GAS6Q14393 721 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 PON2Q15165 354 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 ITPRIPL2Q3MIP1 535 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 DGLUCYQ7Z3D6 616 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 ADGRF2Q8IZF7 708 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 TOP6BLQ8N6T0 577 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 MAB21L3Q8N8X9 362 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 STKLD1Q8NE28 680 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 CXorf38Q8TB03 319 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 ZNF396Q96N95 335 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-210ENST00000472880 KIF9Q9HAQ2 790 aa21.22■□□□□ 0.99
COL9A3-210ENST00000472880 UXTQ9UBK9 157 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-210ENST00000472880 DCHS1Q96JQ0 3298 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 PPP6R2O75170 966 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 TNNC2P02585 160 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 F11P03951 625 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 PCSK1P29120 753 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 LHX1P48742 406 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 ASIC1P78348 528 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 AMPD3Q01432 767 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 MYO1EQ12965 1108 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 PUM1Q14671 1186 aaKnown RBP eCLIP21.21■□□□□ 0.99
COL9A3-210ENST00000472880 SURF1Q15526 300 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 SDHAF4Q5VUM1 108 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 LMBRD2Q68DH5 695 aaPredicted RBP21.21■□□□□ 0.99
COL9A3-210ENST00000472880 Q6ZS52 159 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 TMEM150AQ86TG1 271 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 SPATA2LQ8IUW3 424 aaPredicted RBP21.21■□□□□ 0.99
COL9A3-210ENST00000472880 INTS13Q9NVM9 706 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 SIX4Q9UIU6 781 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 OBSL1O75147 1896 aa21.21■□□□□ 0.99
COL9A3-210ENST00000472880 FRYLO94915 3013 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 ZNF233A6NK53 670 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 CYP2F1P24903 491 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 E2F4Q16254 413 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 DDR2Q16832 855 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 WDR44Q5JSH3 913 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 SCARA3Q6AZY7 606 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 OSTM1Q86WC4 334 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 GLIS3Q8NEA6 775 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 HPS3Q969F9 1004 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 DHX58Q96C10 678 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 TRIM9Q9C026 710 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 GKN1Q9NS71 199 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 TDP1Q9NUW8 608 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 KBTBD4Q9NVX7 518 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 GTF3C4Q9UKN8 822 aa21.2■□□□□ 0.98
COL9A3-210ENST00000472880 DENND4CQ5VZ89 1909 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 WDR87Q6ZQQ6 2873 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 DMXL1Q9Y485 3027 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 SOBPA7XYQ1 873 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 EIF3DO15371 548 aaKnown RBP eCLIP21.19■□□□□ 0.98
COL9A3-210ENST00000472880 PAPSS2O95340 614 aaPredicted RBP21.19■□□□□ 0.98
COL9A3-210ENST00000472880 YEATS4O95619 227 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 CCINQ13939 588 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 TXNDC8Q6A555 127 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 CC2D1AQ6P1N0 951 aaPredicted RBP21.19■□□□□ 0.98
COL9A3-210ENST00000472880 PRR23BQ6ZRT6 265 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 CBWD2Q8IUF1 395 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 SYNPOQ8N3V7 929 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 OR5B17Q8NGF7 314 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 USP13Q92995 863 aaPredicted RBP21.19■□□□□ 0.98
COL9A3-210ENST00000472880 PKMYT1Q99640 499 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 KIAA1586Q9HCI6 787 aa21.19■□□□□ 0.98
COL9A3-210ENST00000472880 HSPBP1Q9NZL4 362 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms