RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 TSHZ1Q6ZSZ6 1077 aa6.97□□□□□ -1.29
CLK1-209ENST00000472679 ZNF280BQ86YH2 543 aa6.97□□□□□ -1.29
CLK1-209ENST00000472679 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.97□□□□□ -1.29
CLK1-209ENST00000472679 LPIN2Q92539 896 aa6.97□□□□□ -1.29
CLK1-209ENST00000472679 Q96MF0 132 aa6.97□□□□□ -1.29
CLK1-209ENST00000472679 TBCBQ99426 244 aa6.97□□□□□ -1.29
CLK1-209ENST00000472679 ZNF518BQ9C0D4 1074 aa6.97□□□□□ -1.29
CLK1-209ENST00000472679 SCAND2PQ9GZW5 306 aaPredicted RBP6.97□□□□□ -1.29
CLK1-209ENST00000472679 MS4A7Q9GZW8 240 aaPredicted RBP6.97□□□□□ -1.29
CLK1-209ENST00000472679 BTBD1Q9H0C5 482 aa6.97□□□□□ -1.29
CLK1-209ENST00000472679 TBCCD1Q9NVR7 557 aa6.97□□□□□ -1.29
CLK1-209ENST00000472679 ANO9A1A5B4 782 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 RHPN2P1A8MT19 583 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 PHKG2P15735 406 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 PPP3CBP16298 524 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 KRT4P19013 534 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 ITGALP20701 1170 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 NEK3P51956 506 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 RAB32Q13637 225 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 ZDHHC24Q6UX98 284 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 LNX2Q8N448 690 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 PARD3BQ8TEW8 1205 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 RAPGEF4Q8WZA2 1011 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 MESP1Q9BRJ9 268 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 CASS4Q9NQ75 786 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 SNX13Q9Y5W8 968 aa6.96□□□□□ -1.3
CLK1-209ENST00000472679 GRID2IPA4D2P6 1211 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 KPNA5O15131 536 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 FSHBP01225 129 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 ATXN1LP0C7T5 689 aaKnown RBP6.95□□□□□ -1.3
CLK1-209ENST00000472679 ACVRL1P37023 503 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 KLF10Q13118 480 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 ZIK1Q3SY52 487 aaPredicted RBP6.95□□□□□ -1.3
CLK1-209ENST00000472679 Q6YL49 198 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 ULK2Q8IYT8 1036 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 LCORLQ8N3X6 602 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 BEND2Q8NDZ0 799 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 MSLNLQ96KJ4 702 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 AMBRA1Q9C0C7 1298 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 A1CFQ9NQ94 594 aaKnown RBP6.95□□□□□ -1.3
CLK1-209ENST00000472679 SYBUQ9NX95 663 aa6.95□□□□□ -1.3
CLK1-209ENST00000472679 ING1Q9UK53 422 aaPredicted RBP6.95□□□□□ -1.3
CLK1-209ENST00000472679 hCG_1984214I3L0E3 225 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 PYCARD-AS1I3L0S3 204 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 SOAT2O75908 522 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 NBPF7P0C2Y1 421 aaPredicted RBP6.94□□□□□ -1.3
CLK1-209ENST00000472679 SRGNP10124 158 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 IL1R1P14778 569 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 CD6P30203 668 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 PXNP49023 591 aaPredicted RBP6.94□□□□□ -1.3
CLK1-209ENST00000472679 PRIM2P49643 509 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 WNT3P56703 355 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 ZNF543Q08ER8 600 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 SLC44A4Q53GD3 710 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 LAYNQ6UX15 382 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 GAS2L3Q86XJ1 694 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 FAM109AQ8N4B1 249 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 MOGAT1Q96PD6 335 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 OSBPL9Q96SU4 736 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 AIFM2Q9BRQ8 373 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 KCTD5Q9NXV2 234 aa6.94□□□□□ -1.3
CLK1-209ENST00000472679 MRPS17Q9Y2R5 130 aaKnown RBP6.94□□□□□ -1.3
CLK1-209ENST00000472679 EPN1Q9Y6I3 576 aaPredicted RBP6.94□□□□□ -1.3
CLK1-209ENST00000472679 CCDC194A0A1B0GVG4 234 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 TRIAP1O43715 76 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 CYP2C9P11712 490 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 CASP5P51878 434 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 LOXL3P58215 753 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 HTRA4P83105 476 aaPredicted RBP6.93□□□□□ -1.3
CLK1-209ENST00000472679 SP2Q02086 613 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 PLA1AQ53H76 456 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 VWA1Q6PCB0 445 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 SLC44A3Q8N4M1 653 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 MYCBPAPQ8TBZ2 947 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 LINC00476Q8WZB0 136 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 PTDSS2Q9BVG9 487 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 STK31Q9BXU1 1019 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 SHOC2Q9UQ13 582 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 SSX2IPQ9Y2D8 614 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.93□□□□□ -1.3
CLK1-209ENST00000472679 SALL3Q9BXA9 1300 aa6.93□□□□□ -1.3
CLK1-209ENST00000472679 MBD3L4A6NDZ8 208 aaPredicted RBP6.92□□□□□ -1.3
CLK1-209ENST00000472679 MBD3L3A6NE82 208 aaPredicted RBP6.92□□□□□ -1.3
CLK1-209ENST00000472679 PDHA1P08559 390 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 RPL17P18621 184 aaKnown RBP6.92□□□□□ -1.3
CLK1-209ENST00000472679 FOXI1Q12951 378 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 ARHGAP40Q5TG30 622 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 LIX1LQ8IVB5 337 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 TOR1AIP2Q8NFQ8 470 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 SPSB4Q96A44 273 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 STRBPQ96SI9 672 aaKnown RBP6.92□□□□□ -1.3
CLK1-209ENST00000472679 ACTRT3Q9BYD9 372 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 KRTAP4-7Q9BYR0 210 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 TPSD1Q9BZJ3 242 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 UNKQ9C0B0 810 aaKnown RBP6.92□□□□□ -1.3
CLK1-209ENST00000472679 CHST8Q9H2A9 424 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 CXorf36Q9H7Y0 433 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 CYP4F11Q9HBI6 524 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 SERHLQ9NQF3 203 aa6.92□□□□□ -1.3
CLK1-209ENST00000472679 SERTAD3Q9UJW9 196 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms