RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 LRRC3CA6NJW4 275 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 ALDH2P05091 517 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 ATXN1LP0C7T5 689 aaKnown RBP7.02□□□□□ -1.29
CCDC39-202ENST00000471307 ELFN1P0C7U0 828 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 SOX8P57073 446 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 LOXL3P58215 753 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 FAM153CQ494X1 144 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 AMOTQ4VCS5 1084 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 GRAMD1CQ8IYS0 662 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 FAM46DQ8NEK8 389 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 KLHDC4Q8TBB5 520 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 CPNE5Q9HCH3 593 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 NMRK2Q9NPI5 230 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 CNNM1Q9NRU3 951 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 HESX1Q9UBX0 185 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 ZNF180Q9UJW8 692 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 WNT6Q9Y6F9 365 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 MRC2Q9UBG0 1479 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 SYNJ1O43426 1573 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 DNMBPQ6XZF7 1577 aa7.02□□□□□ -1.29
CCDC39-202ENST00000471307 H3BML4 177 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 AKAP10O43572 662 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 RBMXL2O75526 392 aaKnown RBP7.01□□□□□ -1.29
CCDC39-202ENST00000471307 RFPL1O75677 317 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 DNAJB5O75953 348 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 RHOP08100 348 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 ZFXP17010 805 aaPredicted RBP7.01□□□□□ -1.29
CCDC39-202ENST00000471307 ZNF37AP17032 561 aaPredicted RBP7.01□□□□□ -1.29
CCDC39-202ENST00000471307 HSPA6P17066 643 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 CHRM3P20309 590 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 ITPKBP27987 946 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 GTF2H3Q13889 308 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 LONRF3Q496Y0 759 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 KHDC1LQ5JSQ8 128 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 TSTD2Q5T7W7 516 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 ICE2Q659A1 982 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 DIS3LQ8TF46 1054 aaKnown RBP7.01□□□□□ -1.29
CCDC39-202ENST00000471307 HAPLN3Q96S86 360 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 MED16Q9Y2X0 877 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 URB2Q14146 1524 aaKnown RBP7.01□□□□□ -1.29
CCDC39-202ENST00000471307 TOPBP1Q92547 1522 aa7.01□□□□□ -1.29
CCDC39-202ENST00000471307 A0A088AWK7 358 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 PPIFP30405 207 aaKnown RBP7□□□□□ -1.29
CCDC39-202ENST00000471307 VIPR2P41587 438 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 KCNJ5P48544 419 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 IQCB1Q15051 598 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 ZNF618Q5T7W0 954 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 KRTAP5-3Q6L8H2 238 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 LAYNQ6UX15 382 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 TMEM108Q6UXF1 575 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 DTX2Q86UW9 622 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 DENND1CQ8IV53 801 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 JPH3Q8WXH2 748 aaPredicted RBP7□□□□□ -1.29
CCDC39-202ENST00000471307 SLC46A1Q96NT5 459 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 CDH19Q9H159 772 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 SERTAD4Q9NUC0 356 aa7□□□□□ -1.29
CCDC39-202ENST00000471307 AP1G1O43747 822 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 TLR5O60602 858 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 THP07101 528 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 NR2F6P10588 404 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 HDCP19113 662 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 RAB27AP51159 221 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 RAB1AP62820 205 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 BOP1Q14137 746 aaKnown RBP6.99□□□□□ -1.29
CCDC39-202ENST00000471307 FGL2Q14314 439 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 VPS53Q5VIR6 699 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 ZNF788Q6ZQV5 615 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 ZNF551Q7Z340 670 aaPredicted RBP6.99□□□□□ -1.29
CCDC39-202ENST00000471307 CAMKK1Q8N5S9 505 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 PCDHA6Q9UN73 950 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 SH2B3Q9UQQ2 575 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 FRMD4BQ9Y2L6 1034 aa6.99□□□□□ -1.29
CCDC39-202ENST00000471307 WDR62O43379 1518 aa6.98□□□□□ -1.29
CCDC39-202ENST00000471307 U2AF1L5P0DN76 240 aaPredicted RBP6.98□□□□□ -1.29
CCDC39-202ENST00000471307 CYP2C9P11712 490 aa6.98□□□□□ -1.29
CCDC39-202ENST00000471307 PXNP49023 591 aaPredicted RBP6.98□□□□□ -1.29
CCDC39-202ENST00000471307 U2AF1Q01081 240 aaKnown RBP eCLIP6.98□□□□□ -1.29
CCDC39-202ENST00000471307 ZNF267Q14586 743 aaPredicted RBP6.98□□□□□ -1.29
CCDC39-202ENST00000471307 TBCCQ15814 346 aa6.98□□□□□ -1.29
CCDC39-202ENST00000471307 PLBD2Q8NHP8 589 aa6.98□□□□□ -1.29
CCDC39-202ENST00000471307 PTDSS2Q9BVG9 487 aa6.98□□□□□ -1.29
CCDC39-202ENST00000471307 RTFDC1Q9BY42 306 aaPredicted RBP6.98□□□□□ -1.29
CCDC39-202ENST00000471307 PIH1D1Q9NWS0 290 aaKnown RBP6.98□□□□□ -1.29
CCDC39-202ENST00000471307 DCLK1O15075 740 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 SOGA1O94964 1423 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 UNC5CO95185 931 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 ONECUT2O95948 504 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 GRPP07492 148 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 CCT8P50990 548 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 ZNF134P52741 427 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 SATB1Q01826 763 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 ZKSCAN2Q63HK3 967 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 ANKRD16Q6P6B7 361 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 PCSK9Q8NBP7 692 aaKnown RBP6.97□□□□□ -1.29
CCDC39-202ENST00000471307 SLC35G2Q8TBE7 412 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 HASPINQ8TF76 798 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 ARHGEF3Q9NR81 526 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 SHOC2Q9UQ13 582 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 FGD5Q6ZNL6 1462 aa6.97□□□□□ -1.29
CCDC39-202ENST00000471307 PPM1DO15297 605 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms