RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 SCARA3Q6AZY7 606 aa20.6■□□□□ 0.89
COL9A3-206ENST00000466532 TXNDC11Q6PKC3 985 aa20.6■□□□□ 0.89
COL9A3-206ENST00000466532 CELF5Q8N6W0 485 aaKnown RBP20.6■□□□□ 0.89
COL9A3-206ENST00000466532 LINC00301Q8NCQ3 95 aa20.6■□□□□ 0.89
COL9A3-206ENST00000466532 ACBD6Q9BR61 282 aa20.6■□□□□ 0.89
COL9A3-206ENST00000466532 SLC46A2Q9BY10 475 aa20.6■□□□□ 0.89
COL9A3-206ENST00000466532 BACH2Q9BYV9 841 aa20.6■□□□□ 0.89
COL9A3-206ENST00000466532 MTMR12Q9C0I1 747 aa20.6■□□□□ 0.89
COL9A3-206ENST00000466532 TNMDQ9H2S6 317 aa20.6■□□□□ 0.89
COL9A3-206ENST00000466532 RBM12Q9NTZ6 932 aaKnown RBP20.6■□□□□ 0.89
COL9A3-206ENST00000466532 DDX43Q9NXZ2 648 aaKnown RBP20.6■□□□□ 0.89
COL9A3-206ENST00000466532 ZMYM5Q9UJ78 669 aa20.6■□□□□ 0.89
COL9A3-206ENST00000466532 MYO16Q9Y6X6 1858 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 SPTLC2O15270 562 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 F11P03951 625 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 HMGA1P17096 107 aaKnown RBP20.59■□□□□ 0.89
COL9A3-206ENST00000466532 ACAT1P24752 427 aaKnown RBP20.59■□□□□ 0.89
COL9A3-206ENST00000466532 GPR15P49685 360 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 NLRP12P59046 1061 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 RBP5P82980 135 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 SATB1Q01826 763 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 TNK2Q07912 1038 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 GAS6Q14393 721 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 STXBP4Q6ZWJ1 553 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 TMEM150AQ86TG1 271 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 CMTM8Q8IZV2 173 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 TMEM86AQ8N2M4 240 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 STKLD1Q8NE28 680 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 GLIS3Q8NEA6 775 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 CXorf38Q8TB03 319 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 LEO1Q8WVC0 666 aaPredicted RBP20.59■□□□□ 0.89
COL9A3-206ENST00000466532 SECISBP2LQ93073 1101 aaKnown RBP20.59■□□□□ 0.89
COL9A3-206ENST00000466532 LRRC27Q9C0I9 530 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 THG1LQ9NWX6 298 aaKnown RBP20.59■□□□□ 0.89
COL9A3-206ENST00000466532 GDAP2Q9NXN4 497 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 MAGED2Q9UNF1 606 aaPredicted RBP20.59■□□□□ 0.89
COL9A3-206ENST00000466532 SNX9Q9Y5X1 595 aa20.59■□□□□ 0.89
COL9A3-206ENST00000466532 GPR179Q6PRD1 2367 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 KIAA0391O15091 583 aaKnown RBP20.58■□□□□ 0.89
COL9A3-206ENST00000466532 CSH1P0DML2 217 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 CSH2P0DML3 217 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 AVPR1AP37288 418 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 PON2Q15165 354 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 WDR44Q5JSH3 913 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 INTS6LQ5JSJ4 861 aaKnown RBP20.58■□□□□ 0.89
COL9A3-206ENST00000466532 DGKKQ5KSL6 1271 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 LMBRD2Q68DH5 695 aaPredicted RBP20.58■□□□□ 0.89
COL9A3-206ENST00000466532 SPEM1Q8N4L4 309 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 MAB21L3Q8N8X9 362 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 HPS3Q969F9 1004 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 ANKRD36BP1Q96IX9 119 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 ZNF396Q96N95 335 aaPredicted RBP20.58■□□□□ 0.89
COL9A3-206ENST00000466532 TFIP11Q9UBB9 837 aaKnown RBP20.58■□□□□ 0.89
COL9A3-206ENST00000466532 SIX4Q9UIU6 781 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 GTF3C4Q9UKN8 822 aa20.58■□□□□ 0.89
COL9A3-206ENST00000466532 R3HCC1Q9Y3T6 440 aaKnown RBP20.58■□□□□ 0.89
COL9A3-206ENST00000466532 PPP6R2O75170 966 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 CYP2F1P24903 491 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 DDX6P26196 483 aaKnown RBP eCLIP20.57■□□□□ 0.88
COL9A3-206ENST00000466532 E2F4Q16254 413 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 DDR2Q16832 855 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 ITPRIPL2Q3MIP1 535 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 SDHAF4Q5VUM1 108 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 Q6ZS52 159 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 OSTM1Q86WC4 334 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 ADGRF2Q8IZF7 708 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 TOP6BLQ8N6T0 577 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 TRIM9Q9C026 710 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 ABCB6Q9NP58 842 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 INTS13Q9NVM9 706 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 KBTBD4Q9NVX7 518 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 CEP250Q9BV73 2442 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 KIAA1549LQ6ZVL6 1849 aa20.57■□□□□ 0.88
COL9A3-206ENST00000466532 PTPRJQ12913 1337 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 CACNA1AO00555 2505 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 EML5Q05BV3 1969 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 ZNF233A6NK53 670 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 TNNC2P02585 160 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 LHX1P48742 406 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 RPL10AP62906 217 aaKnown RBP20.56■□□□□ 0.88
COL9A3-206ENST00000466532 ASIC1P78348 528 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 MYO1EQ12965 1108 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 PUM1Q14671 1186 aaKnown RBP eCLIP20.56■□□□□ 0.88
COL9A3-206ENST00000466532 SURF1Q15526 300 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 TXNDC8Q6A555 127 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 GPR161Q8N6U8 529 aaKnown RBP20.56■□□□□ 0.88
COL9A3-206ENST00000466532 OR5B17Q8NGF7 314 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 SPATA18Q8TC71 538 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 MRPS31Q92665 395 aaKnown RBP20.56■□□□□ 0.88
COL9A3-206ENST00000466532 USP13Q92995 863 aaPredicted RBP20.56■□□□□ 0.88
COL9A3-206ENST00000466532 DHX58Q96C10 678 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 PKMYT1Q99640 499 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 CUEDC2Q9H467 287 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 GKN1Q9NS71 199 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 GMEB2Q9UKD1 530 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 RAB23Q9ULC3 237 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 CCL26Q9Y258 94 aa20.56■□□□□ 0.88
COL9A3-206ENST00000466532 HCRTO43612 131 aa20.55■□□□□ 0.88
COL9A3-206ENST00000466532 PCSK1P29120 753 aa20.55■□□□□ 0.88
COL9A3-206ENST00000466532 AMPD3Q01432 767 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms