RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 C1orf167Q5SNV9 1468 aa19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 XPO1O14980 1071 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 ATP5BP06576 529 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 KCNA2P16389 499 aa19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 RECQLP46063 649 aaPredicted RBP19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 PMS1P54277 932 aaKnown RBP19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 FOXR1Q6PIV2 292 aa19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 PTPRN2Q92932 1015 aa19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 MED24O75448 989 aa19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 LCP1P13796 627 aa19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 CYP11B1P15538 503 aa19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 TFDP3Q5H9I0 405 aa19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 STRIP1Q5VSL9 837 aa19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 AGAP3Q96P47 875 aa19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 ZNF518BQ9C0D4 1074 aa19.8■□□□□ 0.76
CCDC88B-204ENST00000463837 E2F8A0AVK6 867 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 ATP6V1B1P15313 513 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 CDC42EP1Q00587 391 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 EPC2Q52LR7 807 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 ADCK1Q86TW2 530 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 CLEC10AQ8IUN9 316 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 TERB1Q8NA31 727 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 Q4G0T1 1027 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 TMC2Q8TDI7 906 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 PDCD6IPQ8WUM4 868 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 OTUD5Q96G74 571 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 PALMDQ9NP74 551 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 ARHGEF38Q9NXL2 777 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 TEKT2Q9UIF3 430 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 AGAP1Q9UPQ3 857 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 SYF2O95926 243 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 GFAPP14136 432 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 KIAA0895Q8NCT3 520 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 AP4S1Q9Y587 144 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 MYO1DO94832 1006 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 PROSCO94903 275 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 FGFR2P21802 821 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 FBXO36Q8NEA4 188 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 FAR2Q96K12 515 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 ANO4Q32M45 955 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 RNF219Q5W0B1 726 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 SPATA33Q96N06 139 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 DUSP9Q99956 384 aaKnown RBP19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 ILKAPQ9H0C8 392 aaPredicted RBP19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 OLFML3Q9NRN5 406 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 ZNRF3Q9ULT6 936 aa19.79■□□□□ 0.76
CCDC88B-204ENST00000463837 ADGRA3Q8IWK6 1321 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 CDC42EP5Q6NZY7 148 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 NUP93Q8N1F7 819 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 CYGBQ8WWM9 190 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 DIP2CQ9Y2E4 1556 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 FUKQ8N0W3 1084 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 HDAC7Q8WUI4 952 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 SEMA4AQ9H3S1 761 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 OSGEPQ9NPF4 335 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 LRCH1Q9Y2L9 728 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 NWD1Q149M9 1564 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 DGKIO75912 1065 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 TMEM132DQ14C87 1099 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 NOP9Q86U38 636 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 SH3TC2Q8TF17 1288 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 PAFAH2Q99487 392 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 KLHL4Q9C0H6 718 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 TMEM51Q9NW97 253 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 UBA6A0AVT1 1052 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 PIK3CDO00329 1044 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 FAM153BP0C7A2 387 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 FAM153CQ494X1 144 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 MTDHQ86UE4 582 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 TMCO5AQ8N6Q1 288 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 GANCQ8TET4 914 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 SNRNP27Q8WVK2 155 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 ATG4AQ8WYN0 398 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 ELMO2Q96JJ3 720 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 NAT9Q9BTE0 207 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 NT5C1AQ9BXI3 368 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 RPAP3Q9H6T3 665 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 FAM153AQ9UHL3 310 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 PCDHGC5Q9Y5F6 944 aa19.78■□□□□ 0.76
CCDC88B-204ENST00000463837 ZCCHC18P0CG32 403 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 MROH9Q5TGP6 573 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 RBM46Q8TBY0 533 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 TMEM143Q96AN5 459 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 MAML3Q96JK9 1138 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 TMEM120AQ9BXJ8 343 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 TRIM54Q9BYV2 358 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 SHCBP1LQ9BZQ2 653 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 SIK2Q9H0K1 926 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 PAPOLBQ9NRJ5 636 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 SHOC2Q9UQ13 582 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 CCDC78A2IDD5 438 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 SREBF1P36956 1147 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 MRPS15P82914 257 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 EGFL8Q99944 293 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 COG4Q9H9E3 785 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 RHBDL2Q9NX52 303 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 TSR3Q9UJK0 312 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 NAALADL1Q9UQQ1 740 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 VWDEQ8N2E2 1590 aa19.77■□□□□ 0.76
CCDC88B-204ENST00000463837 TCRBV5S4A2TA0A5A2 114 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms