RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 ADGRB3O60242 1522 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 SPDYE5A6NIY4 337 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 ASB14A6NK59 587 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 SUPT3HB4E1H0 165 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 TPST1O60507 370 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 CLASP2O75122 1294 aaKnown RBP8.1□□□□□ -1.11
NEDD9-204ENST00000448183 USP1O94782 785 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 ZCCHC18P0CG32 403 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 CALB2P22676 271 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 PSMA4P25789 261 aaKnown RBP8.1□□□□□ -1.11
NEDD9-204ENST00000448183 RGS4P49798 205 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 NPEPPSP55786 919 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 CACNB2Q08289 660 aaPredicted RBP8.1□□□□□ -1.11
NEDD9-204ENST00000448183 SPDYE7PQ495Y7 208 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 ELMOD1Q8N336 334 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 CAVIN3Q969G5 261 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 ZBTB10Q96DT7 871 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 DDX50Q9BQ39 737 aaKnown RBP8.1□□□□□ -1.11
NEDD9-204ENST00000448183 FRMD8P1Q9BZ68 369 aaPredicted RBP8.1□□□□□ -1.11
NEDD9-204ENST00000448183 IL25Q9H293 177 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 MPP6Q9NZW5 540 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 PKP3Q9Y446 797 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 DAGLAQ9Y4D2 1042 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 SPATA31A3Q5VYP0 1347 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 STRNO43815 780 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 PSMC3P17980 439 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 CCDC15Q0P6D6 951 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 EMC2Q15006 297 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 FAM83EQ2M2I3 478 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 EPC2Q52LR7 807 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 MEI1Q5TIA1 1274 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 TRIM65Q6PJ69 517 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 ANKS3Q6ZW76 656 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 HORMAD1Q86X24 394 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 ANKRD27Q96NW4 1050 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 MMP19Q99542 508 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 RPAP3Q9H6T3 665 aaPredicted RBP8.1□□□□□ -1.11
NEDD9-204ENST00000448183 CD274Q9NZQ7 290 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 CHORDC1Q9UHD1 332 aaPredicted RBP8.1□□□□□ -1.11
NEDD9-204ENST00000448183 HPSEQ9Y251 543 aa8.1□□□□□ -1.11
NEDD9-204ENST00000448183 IGSF9BQ9UPX0 1349 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 UBOX5O94941 541 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 IL18RAPO95256 599 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 CD44P16070 742 aaKnown RBP8.09□□□□□ -1.11
NEDD9-204ENST00000448183 RASA1P20936 1047 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 CDC42EP1Q00587 391 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 VEPH1Q14D04 833 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 CENPPQ6IPU0 288 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 CCNJLQ8IV13 435 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 SEPT1Q8WYJ6 367 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 VPS50Q96JG6 964 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 ZFYVE19Q96K21 471 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 SH3GL2Q99962 352 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 C17orf80Q9BSJ5 609 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 FUCA2Q9BTY2 467 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 AGPAT3Q9NRZ7 376 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 SOX13Q9UN79 622 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 RIMBP3CA6NJZ7 1639 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 RIMBP3BA6NNM3 1639 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 RIMBP3Q9UFD9 1639 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 ERCC6L2Q5T890 1561 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 SPHKAPQ2M3C7 1700 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 EXTL3O43909 919 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 BAATQ14032 418 aaPredicted RBP8.09□□□□□ -1.11
NEDD9-204ENST00000448183 PKN3Q6P5Z2 889 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 TRAF7Q6Q0C0 670 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 FASTKD5Q7L8L6 764 aaKnown RBP8.09□□□□□ -1.11
NEDD9-204ENST00000448183 CCDC60Q8IWA6 550 aaPredicted RBP8.09□□□□□ -1.11
NEDD9-204ENST00000448183 VPS37AQ8NEZ2 397 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 IPMKQ8NFU5 416 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 ECSITQ9BQ95 431 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 CDC42EP4Q9H3Q1 356 aaKnown RBP8.09□□□□□ -1.11
NEDD9-204ENST00000448183 APPL1Q9UKG1 709 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 PIN4Q9Y237 131 aaKnown RBP8.09□□□□□ -1.11
NEDD9-204ENST00000448183 CAB39Q9Y376 341 aaPredicted RBP8.09□□□□□ -1.11
NEDD9-204ENST00000448183 FKBP6O75344 327 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 GSNP06396 782 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 NR3C2P08235 984 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 TXNP10599 105 aaKnown RBP8.09□□□□□ -1.11
NEDD9-204ENST00000448183 GHRP10912 638 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 PON1P27169 355 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 PTPN4P29074 926 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 FDFT1P37268 417 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 RFC5P40937 340 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 EFHC1Q5JVL4 640 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 PPP4R4Q6NUP7 873 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 DENND1BQ6P3S1 775 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 C16orf86Q6ZW13 317 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 SPATA2LQ8IUW3 424 aaPredicted RBP8.09□□□□□ -1.11
NEDD9-204ENST00000448183 SP8Q8IXZ3 490 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 RAB42Q8N4Z0 105 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 ATP8B4Q8TF62 1192 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 FAR2Q96K12 515 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 BBS2Q9BXC9 721 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 TEX13BQ9BXU2 312 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 GEMIN8Q9NWZ8 242 aaKnown RBP8.09□□□□□ -1.11
NEDD9-204ENST00000448183 STMN3Q9NZ72 180 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.09□□□□□ -1.11
NEDD9-204ENST00000448183 PRKAG2Q9UGJ0 569 aa8.09□□□□□ -1.11
NEDD9-204ENST00000448183 PRR12Q9ULL5 1215 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms