RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 SYDE1Q6ZW31 735 aaPredicted RBP27.17■■□□□ 1.94
CPNE1-216ENST00000437340 CCDC50Q8IVM0 306 aa27.17■■□□□ 1.94
CPNE1-216ENST00000437340 RCOR2Q8IZ40 523 aa27.17■■□□□ 1.94
CPNE1-216ENST00000437340 TRIM6Q9C030 488 aaPredicted RBP27.17■■□□□ 1.94
CPNE1-216ENST00000437340 CENPFP49454 3210 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 GOLGA6CA6NDK9 693 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 O00370 1275 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 DUSP11O75319 330 aaKnown RBP27.16■■□□□ 1.94
CPNE1-216ENST00000437340 MICAL2O94851 1124 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 GOLGA6DP0CG33 693 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 SSR1P43307 286 aaKnown RBP27.16■■□□□ 1.94
CPNE1-216ENST00000437340 GABRB2P47870 512 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 NDST1P52848 882 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 CRYBB1P53674 252 aaPredicted RBP27.16■■□□□ 1.94
CPNE1-216ENST00000437340 PURAQ00577 322 aaKnown RBP27.16■■□□□ 1.94
CPNE1-216ENST00000437340 CYP4A22Q5TCH4 519 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 DAB2IPQ5VWQ8 1189 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 ZMAT2Q96NC0 199 aaKnown RBP27.16■■□□□ 1.94
CPNE1-216ENST00000437340 NT5C1AQ9BXI3 368 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 GOLGA6AQ9NYA3 693 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 GRHL1Q9NZI5 618 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 SNX24Q9Y343 169 aa27.16■■□□□ 1.94
CPNE1-216ENST00000437340 PPFIA2O75334 1257 aa27.15■■□□□ 1.94
CPNE1-216ENST00000437340 RALAP11233 206 aa27.15■■□□□ 1.94
CPNE1-216ENST00000437340 ZNF771Q7L3S4 317 aaPredicted RBP27.15■■□□□ 1.94
CPNE1-216ENST00000437340 GRK7Q8WTQ7 553 aa27.15■■□□□ 1.94
CPNE1-216ENST00000437340 HEXIM2Q96MH2 286 aaKnown RBP27.15■■□□□ 1.94
CPNE1-216ENST00000437340 OSBPL8Q9BZF1 889 aa27.15■■□□□ 1.94
CPNE1-216ENST00000437340 DCLK3Q9C098 648 aa27.15■■□□□ 1.94
CPNE1-216ENST00000437340 SAGE1Q9NXZ1 904 aa27.15■■□□□ 1.94
CPNE1-216ENST00000437340 KRT3P12035 628 aa27.14■■□□□ 1.94
CPNE1-216ENST00000437340 ELNP15502 786 aa27.14■■□□□ 1.94
CPNE1-216ENST00000437340 FLT3P36888 993 aa27.14■■□□□ 1.94
CPNE1-216ENST00000437340 COPS2P61201 443 aa27.14■■□□□ 1.94
CPNE1-216ENST00000437340 PSMC1P62191 440 aaKnown RBP27.14■■□□□ 1.94
CPNE1-216ENST00000437340 OGDHQ02218 1023 aa27.14■■□□□ 1.94
CPNE1-216ENST00000437340 UAP1Q16222 522 aaPredicted RBP27.14■■□□□ 1.94
CPNE1-216ENST00000437340 ZDHHC24Q6UX98 284 aa27.14■■□□□ 1.94
CPNE1-216ENST00000437340 C7orf31Q8N865 590 aa27.14■■□□□ 1.94
CPNE1-216ENST00000437340 C1orf54Q8WWF1 131 aa27.14■■□□□ 1.94
CPNE1-216ENST00000437340 CPXM1Q96SM3 734 aa27.14■■□□□ 1.94
CPNE1-216ENST00000437340 TXLNGYQ9BZA5 131 aa27.14■■□□□ 1.94
CPNE1-216ENST00000437340 DDX56Q9NY93 547 aaKnown RBP27.14■■□□□ 1.94
CPNE1-216ENST00000437340 UBQLN1Q9UMX0 589 aaKnown RBP27.14■■□□□ 1.94
CPNE1-216ENST00000437340 PIN4Q9Y237 131 aaKnown RBP27.14■■□□□ 1.94
CPNE1-216ENST00000437340 PLAAQ9Y263 795 aa27.14■■□□□ 1.94
CPNE1-216ENST00000437340 GPD2P43304 727 aa27.14■■□□□ 1.93
CPNE1-216ENST00000437340 RPL21P46778 160 aaKnown RBP27.14■■□□□ 1.93
CPNE1-216ENST00000437340 ORC1Q13415 861 aa27.14■■□□□ 1.93
CPNE1-216ENST00000437340 CCNG2Q16589 344 aa27.14■■□□□ 1.93
CPNE1-216ENST00000437340 TAF2Q6P1X5 1199 aa27.14■■□□□ 1.93
CPNE1-216ENST00000437340 FAM76AQ8TAV0 307 aa27.14■■□□□ 1.93
CPNE1-216ENST00000437340 PPP1R13LQ8WUF5 828 aa27.14■■□□□ 1.93
CPNE1-216ENST00000437340 TMEM40Q8WWA1 233 aa27.14■■□□□ 1.93
CPNE1-216ENST00000437340 HERPUD2Q9BSE4 406 aa27.14■■□□□ 1.93
CPNE1-216ENST00000437340 SYNCQ9H7C4 482 aa27.14■■□□□ 1.93
CPNE1-216ENST00000437340 F8VP50 259 aa27.13■■□□□ 1.93
CPNE1-216ENST00000437340 M0QYV0 167 aa27.13■■□□□ 1.93
CPNE1-216ENST00000437340 RECQL4O94761 1208 aa27.13■■□□□ 1.93
CPNE1-216ENST00000437340 ATF7P17544 494 aaPredicted RBP27.13■■□□□ 1.93
CPNE1-216ENST00000437340 KCNJ1P48048 391 aa27.13■■□□□ 1.93
CPNE1-216ENST00000437340 ZNF200P98182 395 aaPredicted RBP27.13■■□□□ 1.93
CPNE1-216ENST00000437340 DHX9Q08211 1270 aaKnown RBP27.13■■□□□ 1.93
CPNE1-216ENST00000437340 CACNB2Q08289 660 aaPredicted RBP27.13■■□□□ 1.93
CPNE1-216ENST00000437340 NFX1Q12986 1120 aaKnown RBP27.13■■□□□ 1.93
CPNE1-216ENST00000437340 LCLAT1Q6UWP7 414 aa27.13■■□□□ 1.93
CPNE1-216ENST00000437340 POLNQ7Z5Q5 900 aa27.13■■□□□ 1.93
CPNE1-216ENST00000437340 XYLT1Q86Y38 959 aa27.13■■□□□ 1.93
CPNE1-216ENST00000437340 ZNF296Q8WUU4 475 aaPredicted RBP27.13■■□□□ 1.93
CPNE1-216ENST00000437340 MIS12Q9H081 205 aa27.13■■□□□ 1.93
CPNE1-216ENST00000437340 NXF3Q9H4D5 531 aaKnown RBP27.13■■□□□ 1.93
CPNE1-216ENST00000437340 FKTNO75072 461 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 HOXD10P28358 340 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 PTPN7P35236 360 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 PLTPP55058 493 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 PDCLQ13371 301 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 XKR4Q5GH76 650 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 CHST7Q9NS84 486 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 MTRF1LQ9UGC7 380 aaKnown RBP27.12■■□□□ 1.93
CPNE1-216ENST00000437340 HTTP42858 3142 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 H0YGN5 161 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 CD4P01730 458 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 RFC1P35251 1148 aaPredicted RBP27.12■■□□□ 1.93
CPNE1-216ENST00000437340 GJA9P57773 515 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 PPP1R7Q15435 360 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 ATL2Q8NHH9 583 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 FBXO25Q8TCJ0 367 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 MCRS1Q96EZ8 462 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 CXCL16Q9H2A7 254 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 PTPN22Q9Y2R2 807 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 HES2Q9Y543 173 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 NFS1Q9Y697 457 aa27.12■■□□□ 1.93
CPNE1-216ENST00000437340 XPOTO43592 962 aaKnown RBP27.11■■□□□ 1.93
CPNE1-216ENST00000437340 KRT14P02533 472 aa27.11■■□□□ 1.93
CPNE1-216ENST00000437340 ERBB2P04626 1255 aa27.11■■□□□ 1.93
CPNE1-216ENST00000437340 PSMA2P25787 234 aa27.11■■□□□ 1.93
CPNE1-216ENST00000437340 LLGL1Q15334 1064 aa27.11■■□□□ 1.93
CPNE1-216ENST00000437340 TTMPQ5BVD1 217 aa27.11■■□□□ 1.93
CPNE1-216ENST00000437340 ARL8AQ96BM9 186 aa27.11■■□□□ 1.93
CPNE1-216ENST00000437340 SLITRK1Q96PX8 696 aa27.11■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms