RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 SVIPQ8NHG7 77 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 ASB10Q8WXI3 467 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 PTCD3Q96EY7 689 aaKnown RBP5.07□□□□□ -1.6
USP40-204ENST00000427947 MSLNLQ96KJ4 702 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 UNKQ9C0B0 810 aaKnown RBP5.07□□□□□ -1.6
USP40-204ENST00000427947 A1CFQ9NQ94 594 aaKnown RBP5.07□□□□□ -1.6
USP40-204ENST00000427947 TBCCD1Q9NVR7 557 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 SLC52A1Q9NWF4 448 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 PHTF1Q9UMS5 762 aa5.07□□□□□ -1.6
USP40-204ENST00000427947 A0A0B4J269 797 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 MBD3L4A6NDZ8 208 aaPredicted RBP5.06□□□□□ -1.6
USP40-204ENST00000427947 MBD3L3A6NE82 208 aaPredicted RBP5.06□□□□□ -1.6
USP40-204ENST00000427947 POM121BA6NF01 834 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 TRIAP1O43715 76 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 NARSO43776 548 aaKnown RBP5.06□□□□□ -1.6
USP40-204ENST00000427947 RASSF9O75901 435 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 IL18RAPO95256 599 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 PARP1P09874 1014 aaKnown RBP5.06□□□□□ -1.6
USP40-204ENST00000427947 IFIT2P09913 472 aaKnown RBP5.06□□□□□ -1.6
USP40-204ENST00000427947 XRCC6P12956 609 aaKnown RBP eCLIP5.06□□□□□ -1.6
USP40-204ENST00000427947 CASP5P51878 434 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 AK2P54819 239 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 WNT3P56703 355 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 SATB1Q01826 763 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 KRT17Q04695 432 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 SCAPQ12770 1279 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 TUBB3Q13509 450 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 DAG1Q14118 895 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 UBE4AQ14139 1066 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 PTPAQ15257 358 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 RBM20Q5T481 1227 aaKnown RBP5.06□□□□□ -1.6
USP40-204ENST00000427947 CRIP3Q6Q6R5 217 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 SLC30A5Q8TAD4 765 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 SSH3Q8TE77 659 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 SPSB4Q96A44 273 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 TNIP3Q96KP6 325 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 STRBPQ96SI9 672 aaKnown RBP5.06□□□□□ -1.6
USP40-204ENST00000427947 WDR11Q9BZH6 1224 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 SERHL2Q9H4I8 314 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 HDAC9Q9UKV0 1011 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 SHOC2Q9UQ13 582 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 TBC1D30Q9Y2I9 924 aa5.06□□□□□ -1.6
USP40-204ENST00000427947 SPATA31A3Q5VYP0 1347 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 ADH4P08319 380 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 CYP2C9P11712 490 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 PPP3CBP16298 524 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 KLRC1P26715 233 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 CD6P30203 668 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 TM4SF4P48230 202 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 ZNF543Q08ER8 600 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 BRD3Q15059 726 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 PLA1AQ53H76 456 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 ZNF280BQ86YH2 543 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 LCORLQ8N3X6 602 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 CCDC33Q8N5R6 958 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 FUBP1Q96AE4 644 aaKnown RBP5.05□□□□□ -1.6
USP40-204ENST00000427947 MESP1Q9BRJ9 268 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 BRIP1Q9BX63 1249 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 TPSD1Q9BZJ3 242 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 CASS4Q9NQ75 786 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 ZSCAN32Q9NX65 697 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 ITGB1BP2Q9UKP3 347 aa5.05□□□□□ -1.6
USP40-204ENST00000427947 PIPSLA2A3N6 862 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 hCG_1984214I3L0E3 225 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 EGR2P11161 476 aaPredicted RBP5.04□□□□□ -1.6
USP40-204ENST00000427947 C6P13671 934 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 TSHRP16473 764 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 TACR2P21452 398 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 MCM7P33993 719 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 STT3AP46977 705 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 CARSP49589 748 aaKnown RBP5.04□□□□□ -1.6
USP40-204ENST00000427947 ABHD18Q0P651 414 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 SF3B3Q15393 1217 aaKnown RBP5.04□□□□□ -1.6
USP40-204ENST00000427947 MGAT5BQ3V5L5 792 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 ARHGAP40Q5TG30 622 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 VPS53Q5VIR6 699 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 ABHD17BQ5VST6 288 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 ZDHHC24Q6UX98 284 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 SRLQ86TD4 932 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 GGNQ86UU5 652 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 GAS2L3Q86XJ1 694 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.04□□□□□ -1.6
USP40-204ENST00000427947 B3GALNT2Q8NCR0 500 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 LPIN2Q92539 896 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 SNX22Q96L94 193 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 Q96MF0 132 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 PPP1R9BQ96SB3 815 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 OSBPL9Q96SU4 736 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 MPHOSPH6Q99547 160 aaKnown RBP5.04□□□□□ -1.6
USP40-204ENST00000427947 MYD88Q99836 296 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 ELAC2Q9BQ52 826 aaKnown RBP5.04□□□□□ -1.6
USP40-204ENST00000427947 MID2Q9UJV3 735 aa5.04□□□□□ -1.6
USP40-204ENST00000427947 MRPS17Q9Y2R5 130 aaKnown RBP5.04□□□□□ -1.6
USP40-204ENST00000427947 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.04□□□□□ -1.6
USP40-204ENST00000427947 RASA4BC9J798 803 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 RASA4O43374 803 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 MT-ND5P03915 603 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 IL1R1P14778 569 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 TNFSF4P23510 183 aa5.03□□□□□ -1.6
USP40-204ENST00000427947 LRPAP1P30533 357 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms