RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 FSD2A1L4K1 749 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 TGM5O43548 720 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 VNN2O95498 520 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 GLUD1P00367 558 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 PTPN1P18031 435 aaKnown RBP18.1■□□□□ 0.49
COL7A1-202ENST00000422991 GTF2F1P35269 517 aaKnown RBP eCLIP18.1■□□□□ 0.49
COL7A1-202ENST00000422991 ZNF132P52740 706 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 POLR2FP61218 127 aaKnown RBP18.1■□□□□ 0.49
COL7A1-202ENST00000422991 RAPGEF1Q13905 1077 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 ZNF394Q53GI3 561 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 MDH1BQ5I0G3 518 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 FAM171BQ6P995 826 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 LILRA6Q6PI73 481 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 TMEM270Q6UE05 265 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 RNF19BQ6ZMZ0 732 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 ACOT1Q86TX2 421 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 PALB2Q86YC2 1186 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 CRYBG2Q8N1P7 616 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 SLC4A11Q8NBS3 891 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 RBBP8NLQ8NC74 664 aaPredicted RBP18.1■□□□□ 0.49
COL7A1-202ENST00000422991 ZNF461Q8TAF7 563 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 MYCBPAPQ8TBZ2 947 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 LPIN3Q9BQK8 851 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 GPR88Q9GZN0 384 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 TMLHEQ9NVH6 421 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 GTF3C4Q9UKN8 822 aa18.1■□□□□ 0.49
COL7A1-202ENST00000422991 ITIH6Q6UXX5 1313 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 MYBPHLA2RUH7 354 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 MTMR11A4FU01 709 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 TRIM21P19474 475 aaKnown RBP18.09■□□□□ 0.49
COL7A1-202ENST00000422991 JAM2P57087 298 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 KCNC3Q14003 757 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 DRAP1Q14919 205 aaPredicted RBP18.09■□□□□ 0.49
COL7A1-202ENST00000422991 MAPRE1Q15691 268 aaKnown RBP18.09■□□□□ 0.49
COL7A1-202ENST00000422991 NFE2Q16621 373 aaPredicted RBP18.09■□□□□ 0.49
COL7A1-202ENST00000422991 MICALL1Q8N3F8 863 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 EFHBQ8N7U6 833 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 VN1R2Q8NFZ6 395 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 MYLPFQ96A32 169 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 TMEM176AQ96HP8 235 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 STK33Q9BYT3 514 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 TRIM5Q9C035 493 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 TTYH3Q9C0H2 523 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 DNAI2Q9GZS0 605 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 CEP72Q9P209 647 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 AFF4Q9UHB7 1163 aaKnown RBP18.09■□□□□ 0.49
COL7A1-202ENST00000422991 FBXW11Q9UKB1 542 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 HCFC2Q9Y5Z7 792 aa18.09■□□□□ 0.49
COL7A1-202ENST00000422991 F8VZ95 297 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 RNF225M0QZC1 329 aaPredicted RBP18.08■□□□□ 0.48
COL7A1-202ENST00000422991 PAEPP09466 180 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 PNMA6AP0CW24 399 aaPredicted RBP18.08■□□□□ 0.48
COL7A1-202ENST00000422991 KRT5P13647 590 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 ATF2P15336 505 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 EPCAMP16422 314 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 SMARCB1Q12824 385 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 FIGNQ5HY92 759 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 VSTM4Q8IW00 320 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 C2orf15Q8WU43 125 aaKnown RBP18.08■□□□□ 0.48
COL7A1-202ENST00000422991 PCED1BQ96HM7 432 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 PGLYRP2Q96PD5 576 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 IGFLR1Q9H665 355 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 NLRC4Q9NPP4 1024 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 MAFFQ9ULX9 164 aa18.08■□□□□ 0.48
COL7A1-202ENST00000422991 FOXN3O00409 490 aaPredicted RBP18.07■□□□□ 0.48
COL7A1-202ENST00000422991 GLP2RO95838 553 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 ZNF75DP51815 510 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 RBM10P98175 930 aaKnown RBP18.07■□□□□ 0.48
COL7A1-202ENST00000422991 ADCY1Q08828 1119 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 COL19A1Q14993 1142 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 LLGL2Q6P1M3 1020 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 C4orf50Q6ZRC1 276 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 TCEAL8Q8IYN2 117 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 FAM71AQ8IYT1 594 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 C12orf29Q8N999 325 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 ATAD1Q8NBU5 361 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 KREMEN2Q8NCW0 462 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 FUBP3Q96I24 572 aaKnown RBP eCLIP18.07■□□□□ 0.48
COL7A1-202ENST00000422991 CRISPLD1Q9H336 500 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 ABCB6Q9NP58 842 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 MAN1C1Q9NR34 630 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 FAM49BQ9NUQ9 324 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 ABI2Q9NYB9 513 aaPredicted RBP18.07■□□□□ 0.48
COL7A1-202ENST00000422991 THEGQ9P2T0 379 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 PCDHB5Q9Y5E4 795 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 VCANP13611 3396 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 PATJQ8NI35 1801 aa18.07■□□□□ 0.48
COL7A1-202ENST00000422991 BRWD1Q9NSI6 2320 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 DLL1O00548 723 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 LINC01565O15544 149 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 SEC24AO95486 1093 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 SPATA31D3P0C874 917 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 CCDC130P13994 396 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 USP8P40818 1118 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 CDR1P51861 262 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 CYP27A1Q02318 531 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 CFAP221Q4G0U5 840 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 SPECC1LQ69YQ0 1117 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 SPATA31D4Q6ZUB0 917 aa18.06■□□□□ 0.48
COL7A1-202ENST00000422991 CACNA2D4Q7Z3S7 1137 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms