RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 L1RE1Q9UN81 338 aa8.74□□□□□ -1.01
VIM-202ENST00000421459 AGAP1Q9UPQ3 857 aa8.74□□□□□ -1.01
VIM-202ENST00000421459 SLC8A2Q9UPR5 921 aa8.74□□□□□ -1.01
VIM-202ENST00000421459 DERAQ9Y315 318 aa8.74□□□□□ -1.01
VIM-202ENST00000421459 PCDHB5Q9Y5E4 795 aa8.74□□□□□ -1.01
VIM-202ENST00000421459 TRDMT1O14717 391 aaKnown RBP8.73□□□□□ -1.01
VIM-202ENST00000421459 TBCAO75347 108 aaKnown RBP8.73□□□□□ -1.01
VIM-202ENST00000421459 ITGB3P05106 788 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 CCDC192P0DO97 292 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 WEE1P30291 646 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 POLR2BP30876 1174 aaKnown RBP8.73□□□□□ -1.01
VIM-202ENST00000421459 HOXA6P31267 233 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 GJA4P35212 333 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 DDIT3P35638 169 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 AVPR1AP37288 418 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 CASP5P51878 434 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 TFAMQ00059 246 aaKnown RBP8.73□□□□□ -1.01
VIM-202ENST00000421459 PLCB2Q00722 1185 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 GRSF1Q12849 480 aaKnown RBP eCLIP8.73□□□□□ -1.01
VIM-202ENST00000421459 BFSP1Q12934 665 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 SF3A1Q15459 793 aaKnown RBP8.73□□□□□ -1.01
VIM-202ENST00000421459 LMBRD2Q68DH5 695 aaPredicted RBP8.73□□□□□ -1.01
VIM-202ENST00000421459 IL31Q6EBC2 164 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 C1orf228Q6PIY5 440 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 ZNF720Q7Z2F6 126 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 CACNA2D4Q7Z3S7 1137 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 SYNPOQ8N3V7 929 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 PDCL2Q8N4E4 241 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 KCTD17Q8N5Z5 321 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 C1orf127Q8N9H9 656 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 C12orf50Q8NA57 414 aaPredicted RBP8.73□□□□□ -1.01
VIM-202ENST00000421459 RASSF8Q8NHQ8 419 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 RPLP0P6Q8NHW5 317 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 SPPL2BQ8TCT7 592 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 NOC3LQ8WTT2 800 aaKnown RBP8.73□□□□□ -1.01
VIM-202ENST00000421459 POMGNT1Q8WZA1 660 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 LARP4BQ92615 738 aaKnown RBP8.73□□□□□ -1.01
VIM-202ENST00000421459 AK8Q96MA6 479 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 TSPAN18Q96SJ8 248 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 PANK2Q9BZ23 570 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 PCIF1Q9H4Z3 704 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 ASB7Q9H672 318 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 TDP1Q9NUW8 608 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 HSFX1Q9UBD0 423 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 GTF3C4Q9UKN8 822 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 DSEQ9UL01 958 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 C2CD2Q9Y426 696 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 CLIC4Q9Y696 253 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 WNT6Q9Y6F9 365 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 STYXL1Q9Y6J8 313 aa8.73□□□□□ -1.01
VIM-202ENST00000421459 PDCD11Q14690 1871 aaKnown RBP8.72□□□□□ -1.01
VIM-202ENST00000421459 C2orf78A6NCI8 922 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 MYMKA6NI61 221 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 SCAMP3O14828 347 aaKnown RBP8.72□□□□□ -1.01
VIM-202ENST00000421459 GIPC1O14908 333 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 ATP2C2O75185 946 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 EPN2O95208 641 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 ZNF806P0C7X5 589 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 ZXDBP98169 803 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 PSMD2Q13200 908 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 SV2CQ496J9 727 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 PLK5Q496M5 336 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 PLA2G2CQ5R387 149 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 STPG1Q5TH74 334 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 LARP1BQ659C4 914 aaKnown RBP8.72□□□□□ -1.01
VIM-202ENST00000421459 FAM173BQ6P4H8 233 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 MON1AQ86VX9 555 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 SFTPA1Q8IWL2 248 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 SCN4BQ8IWT1 228 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 DCP1BQ8IZD4 617 aaKnown RBP8.72□□□□□ -1.01
VIM-202ENST00000421459 CSGALNACT2Q8N6G5 542 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 ARL14EPQ8N8R7 260 aaPredicted RBP8.72□□□□□ -1.01
VIM-202ENST00000421459 CXorf38Q8TB03 319 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 CLIC6Q96NY7 704 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 PKMYT1Q99640 499 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 STRA6Q9BX79 667 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 DUSP15Q9H1R2 295 aaPredicted RBP8.72□□□□□ -1.01
VIM-202ENST00000421459 ECT2Q9H8V3 914 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 DDX43Q9NXZ2 648 aaKnown RBP8.72□□□□□ -1.01
VIM-202ENST00000421459 SIX4Q9UIU6 781 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 F5P12259 2224 aa8.72□□□□□ -1.01
VIM-202ENST00000421459 CITO14578 2027 aa8.71□□□□□ -1.01
VIM-202ENST00000421459 TSC2P49815 1807 aa8.71□□□□□ -1.01
VIM-202ENST00000421459 EIF5BO60841 1220 aaKnown RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 PPP1R37O75864 691 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 TOP3BO95985 862 aaKnown RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 KRT19P08727 400 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 PAX3P23760 479 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 LMO2P25791 158 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 PMLP29590 882 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 LONP1P36776 959 aaKnown RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 MPLP40238 635 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 SEC13P55735 322 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 PSMC1P62191 440 aaKnown RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 TSPY1Q01534 308 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 CEBPZQ03701 1054 aaKnown RBP8.71□□□□□ -1.02
VIM-202ENST00000421459 MTF1Q14872 753 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 RABEP1Q15276 862 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 ZNF77Q15935 545 aa8.71□□□□□ -1.02
VIM-202ENST00000421459 SLFN12LQ6IEE8 588 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms