RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 NECAB3Q96P71 396 aaPredicted RBP13.33□□□□□ -0.28
SKA1-203ENST00000417656 SEPT5Q99719 369 aaPredicted RBP13.33□□□□□ -0.28
SKA1-203ENST00000417656 ARID3AQ99856 593 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 FUCA2Q9BTY2 467 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 RHOBTB2Q9BYZ6 727 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 PIDD1Q9HB75 910 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 SAMSN1Q9NSI8 373 aaKnown RBP13.33□□□□□ -0.28
SKA1-203ENST00000417656 MAGEC2Q9UBF1 373 aaPredicted RBP13.33□□□□□ -0.28
SKA1-203ENST00000417656 GTF3C4Q9UKN8 822 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 CDH9Q9ULB4 789 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 MAFFQ9ULX9 164 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 SLC27A5Q9Y2P5 690 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 CLUHO75153 1309 aa13.33□□□□□ -0.28
SKA1-203ENST00000417656 A8MXQ7 604 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 KCNJ18B7U540 433 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 XYLBO75191 536 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 POU2F2P09086 479 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 FAM163BP0C2L3 166 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 CD58P19256 250 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 GNL1P36915 607 aaPredicted RBP13.32□□□□□ -0.28
SKA1-203ENST00000417656 NDST1P52848 882 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 NTHL1P78549 312 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 MYL5Q02045 173 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 LRMPQ12912 555 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 KCNJ12Q14500 433 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 NFKBIBQ15653 356 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 NFE2Q16621 373 aaPredicted RBP13.32□□□□□ -0.28
SKA1-203ENST00000417656 MAN2A1Q16706 1144 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 UVSSAQ2YD98 709 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 MGAT5BQ3V5L5 792 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 MDH1BQ5I0G3 518 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 WDR44Q5JSH3 913 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 ATAT1Q5SQI0 421 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 SPPL2BQ8TCT7 592 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 C2orf15Q8WU43 125 aaKnown RBP13.32□□□□□ -0.28
SKA1-203ENST00000417656 TATDN2Q93075 761 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 LPIN3Q9BQK8 851 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 HCFC1R1Q9NWW0 138 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 PCDHB5Q9Y5E4 795 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 DOCK6Q96HP0 2047 aa13.32□□□□□ -0.28
SKA1-203ENST00000417656 NOTCH4Q99466 2003 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 PMM2O15305 246 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 P4HA2O15460 535 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 HAPLN1P10915 354 aaPredicted RBP13.31□□□□□ -0.28
SKA1-203ENST00000417656 PRKCSHP14314 528 aaPredicted RBP13.31□□□□□ -0.28
SKA1-203ENST00000417656 ATF6P18850 670 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 GPR15P49685 360 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 ZP2Q05996 745 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 INCA1Q0VD86 236 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 CETN1Q12798 172 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 SMARCB1Q12824 385 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 SKOR2Q2VWA4 1001 aaPredicted RBP13.31□□□□□ -0.28
SKA1-203ENST00000417656 ZSCAN23Q3MJ62 389 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 CDKAL1Q5VV42 579 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 FAM171BQ6P995 826 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 CYP26C1Q6V0L0 522 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 RTL10Q7L3V2 364 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 GRASPQ7Z6J2 395 aaPredicted RBP13.31□□□□□ -0.28
SKA1-203ENST00000417656 SPATA2LQ8IUW3 424 aaPredicted RBP13.31□□□□□ -0.28
SKA1-203ENST00000417656 AOPEPQ8N6M6 819 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 B3GALNT2Q8NCR0 500 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 PCED1BQ96HM7 432 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 NT5C1BQ96P26 610 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 TWNKQ96RR1 684 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 PHF7Q9BWX1 381 aaPredicted RBP13.31□□□□□ -0.28
SKA1-203ENST00000417656 INTS2Q9H0H0 1204 aaKnown RBP13.31□□□□□ -0.28
SKA1-203ENST00000417656 CYP3A43Q9HB55 503 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 TAB2Q9NYJ8 693 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 GCNT4Q9P109 453 aa13.31□□□□□ -0.28
SKA1-203ENST00000417656 C5orf42Q9H799 3197 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 LETM1O95202 739 aaPredicted RBP13.3□□□□□ -0.28
SKA1-203ENST00000417656 PTPN1P18031 435 aaKnown RBP13.3□□□□□ -0.28
SKA1-203ENST00000417656 EEF1GP26641 437 aaKnown RBP13.3□□□□□ -0.28
SKA1-203ENST00000417656 ALDH1A3P47895 512 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 CYP27A1Q02318 531 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 PLD1Q13393 1074 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 CUL2Q13617 745 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 NCAPHQ15003 741 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 TCP11X2Q5H9J9 407 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 MIIPQ5JXC2 388 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 C4orf50Q6ZRC1 276 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 GET4Q7L5D6 327 aaPredicted RBP13.3□□□□□ -0.28
SKA1-203ENST00000417656 ACOT1Q86TX2 421 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 ARHGEF19Q8IW93 802 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 ADHFE1Q8IWW8 467 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 ELMOD1Q8N336 334 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 STKLD1Q8NE28 680 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 LMO3Q8TAP4 145 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 MYCBPAPQ8TBZ2 947 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 SLC39A7Q92504 469 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 UHRF1Q96T88 793 aaPredicted RBP13.3□□□□□ -0.28
SKA1-203ENST00000417656 TUBGCP2Q9BSJ2 902 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 NAT10Q9H0A0 1025 aaKnown RBP13.3□□□□□ -0.28
SKA1-203ENST00000417656 WDR6Q9NNW5 1121 aaKnown RBP13.3□□□□□ -0.28
SKA1-203ENST00000417656 ABCB6Q9NP58 842 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 FANCLQ9NW38 375 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 CEP72Q9P209 647 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 DNMT3BQ9UBC3 853 aaKnown RBP13.3□□□□□ -0.28
SKA1-203ENST00000417656 HSFX1Q9UBD0 423 aa13.3□□□□□ -0.28
SKA1-203ENST00000417656 PRKAG3Q9UGI9 489 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms