RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 SURF1Q15526 300 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 KCTD16Q68DU8 428 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 CRELD2Q6UXH1 353 aaPredicted RBP15.71■□□□□ 0.1
USP4-203ENST00000415188 MICALL1Q8N3F8 863 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 C3orf20Q8ND61 904 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 TCP11Q8WWU5 503 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 TMEM143Q96AN5 459 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 MSTO1Q9BUK6 570 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 OSBPL7Q9BZF2 842 aa15.71■□□□□ 0.1
USP4-203ENST00000415188 ATXN2Q99700 1313 aaKnown RBP15.7■□□□□ 0.1
USP4-203ENST00000415188 ABHD14A-ACY1A0A1B0GW23 586 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 MYO1FO00160 1098 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 EBAG9O00559 213 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 MAFO75444 373 aaPredicted RBP15.7■□□□□ 0.1
USP4-203ENST00000415188 LGR5O75473 907 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 VNN1O95497 513 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 ACO1P21399 889 aaKnown RBP15.7■□□□□ 0.1
USP4-203ENST00000415188 TCF7P36402 384 aaPredicted RBP15.7■□□□□ 0.1
USP4-203ENST00000415188 MDH1P40925 334 aaKnown RBP15.7■□□□□ 0.1
USP4-203ENST00000415188 SIX1Q15475 284 aaPredicted RBP15.7■□□□□ 0.1
USP4-203ENST00000415188 FAM117BQ6P1L5 589 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 CCDC137Q6PK04 289 aaKnown RBP15.7■□□□□ 0.1
USP4-203ENST00000415188 B4GALNT4Q76KP1 1039 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 MON1BQ7L1V2 547 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 BCAS4Q8TDM0 211 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 ARNTL2Q8WYA1 636 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 SEPT1Q8WYJ6 367 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 JPH2Q9BR39 696 aaPredicted RBP15.7■□□□□ 0.1
USP4-203ENST00000415188 PI4K2AQ9BTU6 479 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 EPN3Q9H201 632 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 MRPL47Q9HD33 250 aaKnown RBP15.7■□□□□ 0.1
USP4-203ENST00000415188 ACP6Q9NPH0 428 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.7■□□□□ 0.1
USP4-203ENST00000415188 HOMER3Q9NSC5 361 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 RSPH14Q9UHP6 348 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 ANAPC7Q9UJX3 599 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 SCINQ9Y6U3 715 aa15.7■□□□□ 0.1
USP4-203ENST00000415188 PSTPIP1O43586 416 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 PROSCO94903 275 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 LSP1P33241 339 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 FLT3P36888 993 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 STAT5BP51692 787 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 PMS2P54278 862 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 C1QBPQ07021 282 aaKnown RBP15.69■□□□□ 0.1
USP4-203ENST00000415188 PDCLQ13371 301 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 IKBKEQ14164 716 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 IER5Q5VY09 327 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 CDCA2Q69YH5 1023 aaPredicted RBP15.69■□□□□ 0.1
USP4-203ENST00000415188 ZDHHC24Q6UX98 284 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.69■□□□□ 0.1
USP4-203ENST00000415188 ADAT2Q7Z6V5 191 aaKnown RBP15.69■□□□□ 0.1
USP4-203ENST00000415188 PHF13Q86YI8 300 aaPredicted RBP15.69■□□□□ 0.1
USP4-203ENST00000415188 BRSK2Q8IWQ3 736 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 DBF4BQ8NFT6 615 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 GRK7Q8WTQ7 553 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 GLG1Q92896 1179 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 C18orf8Q96DM3 657 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 PCYT2Q99447 389 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 ZBED2Q9BTP6 218 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 TMEM109Q9BVC6 243 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 MRPL4Q9BYD3 311 aaKnown RBP15.69■□□□□ 0.1
USP4-203ENST00000415188 IMPG2Q9BZV3 1241 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 C2orf40Q9H1Z8 148 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 PABPC3Q9H361 631 aaKnown RBP15.69■□□□□ 0.1
USP4-203ENST00000415188 CNOT10Q9H9A5 744 aaKnown RBP15.69■□□□□ 0.1
USP4-203ENST00000415188 GRHL1Q9NZI5 618 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 FEZ2Q9UHY8 353 aaPredicted RBP15.69■□□□□ 0.1
USP4-203ENST00000415188 CNTNAP2Q9UHC6 1331 aa15.69■□□□□ 0.1
USP4-203ENST00000415188 ECEL1O95672 775 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 RARAP10276 462 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 MARK3P27448 753 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 ACOT2P49753 483 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 NOP14P78316 857 aaKnown RBP15.68■□□□□ 0.1
USP4-203ENST00000415188 ADAM17P78536 824 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 IFFO1Q0D2I5 559 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 CAPSQ13938 189 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 KRT71Q3SY84 523 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 DENND2CQ68D51 928 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 TTC27Q6P3X3 843 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 FOXR1Q6PIV2 292 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 WDR49Q8IV35 697 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 CCDC105Q8IYK2 499 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 BBXQ8WY36 941 aaPredicted RBP15.68■□□□□ 0.1
USP4-203ENST00000415188 TARS2Q9BW92 718 aaKnown RBP15.68■□□□□ 0.1
USP4-203ENST00000415188 TRIM31Q9BZY9 425 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 HAPLN2Q9GZV7 340 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 WHRNQ9P202 907 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 SNX24Q9Y343 169 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 PCDHB4Q9Y5E5 795 aa15.68■□□□□ 0.1
USP4-203ENST00000415188 MYO1CO00159 1063 aa15.67■□□□□ 0.1
USP4-203ENST00000415188 GJB5O95377 273 aa15.67■□□□□ 0.1
USP4-203ENST00000415188 PAEPP09466 180 aa15.67■□□□□ 0.1
USP4-203ENST00000415188 GNAT1P11488 350 aa15.67■□□□□ 0.1
USP4-203ENST00000415188 GNA15P30679 374 aa15.67■□□□□ 0.1
USP4-203ENST00000415188 ATP1A2P50993 1020 aa15.67■□□□□ 0.1
USP4-203ENST00000415188 PLTPP55058 493 aa15.67■□□□□ 0.1
USP4-203ENST00000415188 PPP2R2AP63151 447 aa15.67■□□□□ 0.1
USP4-203ENST00000415188 NOMO3P69849 1222 aa15.67■□□□□ 0.1
USP4-203ENST00000415188 MKRN4PQ13434 485 aaPredicted RBP15.67■□□□□ 0.1
USP4-203ENST00000415188 MXD4Q14582 209 aaPredicted RBP15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms