RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 GLB1LQ6UWU2 654 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 LRRC31Q6UY01 552 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 SPATA2LQ8IUW3 424 aaPredicted RBP11.73□□□□□ -0.53
PTPRF-204ENST00000412568 SCUBE3Q8IX30 993 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 C7orf43Q8WVR3 580 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 UBQLN1Q9UMX0 589 aaKnown RBP11.73□□□□□ -0.53
PTPRF-204ENST00000412568 ARHGEF37A1IGU5 675 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 NFICP08651 508 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 HNRNPH3P31942 346 aaKnown RBP11.73□□□□□ -0.53
PTPRF-204ENST00000412568 CAV1Q03135 178 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 TAP1Q03518 808 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 NT5DC3Q86UY8 548 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 ZNF677Q86XU0 584 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 PALB2Q86YC2 1186 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 BRSK2Q8IWQ3 736 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 MAML1Q92585 1016 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 VCX3BQ9H321 246 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 ATP8B3O60423 1300 aa11.73□□□□□ -0.53
PTPRF-204ENST00000412568 DOT1LQ8TEK3 1739 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 TRPM3Q9HCF6 1732 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 CYB561D2O14569 222 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 FARP2O94887 1054 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 FCGRTP55899 365 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 TPI1P60174 286 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 TSTA3Q13630 321 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 THOC5Q13769 683 aaKnown RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 KYAT1Q16773 422 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 ABHD15Q6UXT9 468 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 TSEN2Q8NCE0 465 aaKnown RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 ZNF473Q8WTR7 871 aaKnown RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 PGBD4Q96DM1 585 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 TMEM176AQ96HP8 235 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 GMLQ99445 158 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 SEPT5Q99719 369 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 TRAIPQ9BWF2 469 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 RNPEPQ9H4A4 650 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 SAE1Q9UBE0 346 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 TLK1Q9UKI8 766 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 PLIN4Q96Q06 1357 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 F8VP50 259 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 CHUKO15111 745 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 CHN1P15882 459 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 KCNA2P16389 499 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 LRIG3Q6UXM1 1119 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 BZW1Q7L1Q6 419 aaKnown RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 ARHGAP24Q8N264 748 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 TTC39CQ8N584 583 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 SLC24A3Q9HC58 644 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 SALL4Q9UJQ4 1053 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 SNCAIPQ9Y6H5 919 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 NOL4O94818 638 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 GARSP41250 739 aaKnown RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 EPHB1P54762 984 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 ZNF280AP59817 542 aaPredicted RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 GPR142Q7Z601 462 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 AGR3Q8TD06 166 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 RXFP2Q8WXD0 754 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 FSD1LQ9BXM9 530 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 SMYD3Q9H7B4 428 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 SPATS2LQ9NUQ6 558 aaKnown RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 PRKAG2Q9UGJ0 569 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 TSR3Q9UJK0 312 aaKnown RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 TSPAN16Q9UKR8 245 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 PCDHGC5Q9Y5F6 944 aa11.72□□□□□ -0.53
PTPRF-204ENST00000412568 GOLGA4Q13439 2230 aaKnown RBP11.72□□□□□ -0.53
PTPRF-204ENST00000412568 BTBD19C9JJ37 291 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 M0QYT0 321 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 COPEO14579 308 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 AP1G2O75843 785 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 KRT37O76014 449 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 TMPRSS15P98073 1019 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 CDC42EP1Q00587 391 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 MGAT5BQ3V5L5 792 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 ZPBP2Q6X784 338 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 ADAM32Q8TC27 787 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 DDIT4Q9NX09 232 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 CASZ1Q86V15 1759 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 ERFP50548 548 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 PRMT1Q99873 361 aaKnown RBP11.71□□□□□ -0.53
PTPRF-204ENST00000412568 CEP41Q9BYV8 373 aa11.71□□□□□ -0.53
PTPRF-204ENST00000412568 XPO7Q9UIA9 1087 aaKnown RBP11.71□□□□□ -0.53
PTPRF-204ENST00000412568 A0A0A6YYK5 440 aaPredicted RBP11.71□□□□□ -0.54
PTPRF-204ENST00000412568 IQANK1A0A1B0GTG1 560 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 PLA2G6O60733 806 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 ZC3H11AO75152 810 aaKnown RBP eCLIP11.71□□□□□ -0.54
PTPRF-204ENST00000412568 SMIM24O75264 130 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 PROSCO94903 275 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 ITIH2P19823 946 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 GCNT1Q02742 428 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 SREBF2Q12772 1141 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 SPARCL1Q14515 664 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 TRADDQ15628 312 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 SV2CQ496J9 727 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 C3orf62Q6ZUJ4 267 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 CFAP61Q8NHU2 1237 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 FAM172AQ8WUF8 416 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 CDT1Q9H211 546 aa11.71□□□□□ -0.54
PTPRF-204ENST00000412568 ACTR5Q9H9F9 607 aaPredicted RBP11.71□□□□□ -0.54
PTPRF-204ENST00000412568 PLEKHA5Q9HAU0 1116 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms