RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 HPDLQ96IR7 371 aa14.35□□□□□ -0.11
LIMS1-205ENST00000410093 SCLT1Q96NL6 688 aa14.35□□□□□ -0.11
LIMS1-205ENST00000410093 TRAIPQ9BWF2 469 aa14.35□□□□□ -0.11
LIMS1-205ENST00000410093 ROPN1BQ9BZX4 212 aaPredicted RBP14.35□□□□□ -0.11
LIMS1-205ENST00000410093 ZMYND15Q9H091 742 aa14.35□□□□□ -0.11
LIMS1-205ENST00000410093 PLEKHA4Q9H4M7 779 aa14.35□□□□□ -0.11
LIMS1-205ENST00000410093 CNOT10Q9H9A5 744 aaKnown RBP14.35□□□□□ -0.11
LIMS1-205ENST00000410093 ROPN1Q9HAT0 212 aaPredicted RBP14.35□□□□□ -0.11
LIMS1-205ENST00000410093 NXF1Q9UBU9 619 aaKnown RBP14.35□□□□□ -0.11
LIMS1-205ENST00000410093 PRDM4Q9UKN5 801 aa14.35□□□□□ -0.11
LIMS1-205ENST00000410093 BARX2Q9UMQ3 279 aaPredicted RBP14.35□□□□□ -0.11
LIMS1-205ENST00000410093 DRG1Q9Y295 367 aaKnown RBP14.35□□□□□ -0.11
LIMS1-205ENST00000410093 F2P00734 622 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 ITGB3P05106 788 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 GJB1P08034 283 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 NFICP08651 508 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 ZNF286BP0CG31 522 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 ATF7P17544 494 aaPredicted RBP14.34□□□□□ -0.11
LIMS1-205ENST00000410093 RDXP35241 583 aaKnown RBP14.34□□□□□ -0.11
LIMS1-205ENST00000410093 YARSP54577 528 aaKnown RBP14.34□□□□□ -0.11
LIMS1-205ENST00000410093 PTPN11Q06124 597 aaPredicted RBP14.34□□□□□ -0.11
LIMS1-205ENST00000410093 MAP2K5Q13163 448 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 BYSLQ13895 437 aaKnown RBP14.34□□□□□ -0.11
LIMS1-205ENST00000410093 MORN1Q5T089 497 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 MARCH8Q5T0T0 291 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 C6orf118Q5T5N4 469 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 NOTUMQ6P988 496 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 SLC27A1Q6PCB7 646 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 TTC13Q8NBP0 860 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 CXorf38Q8TB03 319 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 FBXO25Q8TCJ0 367 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 ELMO3Q96BJ8 720 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 PGM2Q96G03 612 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 FAM84AQ96KN4 292 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 KATNAL1Q9BW62 490 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 TRIM31Q9BZY9 425 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 GABRQQ9UN88 632 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 ATP8A1Q9Y2Q0 1164 aa14.34□□□□□ -0.11
LIMS1-205ENST00000410093 MBLAC1A4D2B0 266 aaPredicted RBP14.33□□□□□ -0.12
LIMS1-205ENST00000410093 EIF3HO15372 352 aaKnown RBP eCLIP14.33□□□□□ -0.12
LIMS1-205ENST00000410093 XPOTO43592 962 aaKnown RBP14.33□□□□□ -0.12
LIMS1-205ENST00000410093 VTNP04004 478 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 CFHP08603 1231 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 SETSIPP0DME0 302 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 CD19P15391 556 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 DESP17661 470 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 CPT1AP50416 773 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 IRAK1P51617 712 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 OSTNP61366 133 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 KRT17Q04695 432 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 NFX1Q12986 1120 aaKnown RBP14.33□□□□□ -0.12
LIMS1-205ENST00000410093 TMEM63BQ5T3F8 832 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 OLFML2BQ68BL8 750 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 ZNF365Q70YC5 407 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 RELL1Q8IUW5 271 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 NME8Q8N427 588 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 LRRC52Q8N7C0 313 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 CEP120Q8N960 986 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 IPO4Q8TEX9 1081 aaKnown RBP14.33□□□□□ -0.12
LIMS1-205ENST00000410093 FAM107BQ9H098 131 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 DPP3Q9NY33 737 aa14.33□□□□□ -0.12
LIMS1-205ENST00000410093 ZHX1Q9UKY1 873 aaPredicted RBP14.33□□□□□ -0.12
LIMS1-205ENST00000410093 CENPFP49454 3210 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 TCRBV7S2A1N4TA0A589 114 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 ERICH4A6NGS2 130 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 KPNA6O60684 536 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 CALCAP01258 141 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 RPLP2P05387 115 aaKnown RBP14.32□□□□□ -0.12
LIMS1-205ENST00000410093 RALAP11233 206 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 GNAT1P11488 350 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 KRT3P12035 628 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 ATF2P15336 505 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 EN2P19622 333 aaPredicted RBP14.32□□□□□ -0.12
LIMS1-205ENST00000410093 TAS2R40P59535 323 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 TFDP3Q5H9I0 405 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 SPATS2Q86XZ4 545 aaKnown RBP14.32□□□□□ -0.12
LIMS1-205ENST00000410093 WDTC1Q8N5D0 677 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 SLC4A11Q8NBS3 891 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 BEST2Q8NFU1 509 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 TFAP2BQ92481 460 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 MCEEQ96PE7 176 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 NT5C1AQ9BXI3 368 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 TRIM7Q9C029 511 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 ADAMTS10Q9H324 1103 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 SYNCQ9H7C4 482 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 ASIC3Q9UHC3 531 aa14.32□□□□□ -0.12
LIMS1-205ENST00000410093 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.32□□□□□ -0.12
LIMS1-205ENST00000410093 GNEQ9Y223 722 aaKnown RBP14.32□□□□□ -0.12
LIMS1-205ENST00000410093 PDCD11Q14690 1871 aaKnown RBP14.32□□□□□ -0.12
LIMS1-205ENST00000410093 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.31□□□□□ -0.12
LIMS1-205ENST00000410093 CD4P01730 458 aa14.31□□□□□ -0.12
LIMS1-205ENST00000410093 ATP5DP30049 168 aa14.31□□□□□ -0.12
LIMS1-205ENST00000410093 SSR1P43307 286 aaKnown RBP14.31□□□□□ -0.12
LIMS1-205ENST00000410093 RPL7AP62424 266 aaKnown RBP14.31□□□□□ -0.12
LIMS1-205ENST00000410093 KRT71Q3SY84 523 aa14.31□□□□□ -0.12
LIMS1-205ENST00000410093 GJC2Q5T442 439 aaPredicted RBP14.31□□□□□ -0.12
LIMS1-205ENST00000410093 LCLAT1Q6UWP7 414 aa14.31□□□□□ -0.12
LIMS1-205ENST00000410093 SCARA5Q6ZMJ2 495 aa14.31□□□□□ -0.12
LIMS1-205ENST00000410093 UNC93AQ86WB7 457 aa14.31□□□□□ -0.12
LIMS1-205ENST00000410093 PXYLP1Q8TE99 480 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms