RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 BPIFB1Q8TDL5 484 aa30.72■■■□□ 2.51
HMGB1-205ENST00000399494 RTKNQ9BST9 563 aa30.72■■■□□ 2.51
HMGB1-205ENST00000399494 SLC46A2Q9BY10 475 aa30.72■■■□□ 2.51
HMGB1-205ENST00000399494 MRPL44Q9H9J2 332 aaKnown RBP30.72■■■□□ 2.51
HMGB1-205ENST00000399494 PANK4Q9NVE7 773 aa30.72■■■□□ 2.51
HMGB1-205ENST00000399494 SCN1AP35498 2009 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 TSC2P49815 1807 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 PFKFB1P16118 471 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 CNR2P34972 360 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 TAF6P49848 677 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 PLCB2Q00722 1185 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 TNK2Q07912 1038 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 VEPH1Q14D04 833 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 WSCD1Q658N2 575 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 ZNF720Q7Z2F6 126 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 LONP2Q86WA8 852 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 GIPC2Q8TF65 315 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 C2orf15Q8WU43 125 aaKnown RBP30.71■■■□□ 2.51
HMGB1-205ENST00000399494 IKZF4Q9H2S9 585 aa30.71■■■□□ 2.51
HMGB1-205ENST00000399494 NUP210Q8TEM1 1887 aaPredicted RBP30.71■■■□□ 2.51
HMGB1-205ENST00000399494 DCDC2BA2VCK2 349 aa30.7■■■□□ 2.51
HMGB1-205ENST00000399494 LRP3O75074 770 aa30.7■■■□□ 2.51
HMGB1-205ENST00000399494 HAPLN1P10915 354 aaPredicted RBP30.7■■■□□ 2.51
HMGB1-205ENST00000399494 CDC25CP30307 473 aa30.7■■■□□ 2.51
HMGB1-205ENST00000399494 SMARCB1Q12824 385 aa30.7■■■□□ 2.51
HMGB1-205ENST00000399494 SRSF5Q13243 272 aaKnown RBP30.7■■■□□ 2.51
HMGB1-205ENST00000399494 CCINQ13939 588 aa30.7■■■□□ 2.51
HMGB1-205ENST00000399494 TBC1D7Q9P0N9 293 aa30.7■■■□□ 2.51
HMGB1-205ENST00000399494 DYNC1LI1Q9Y6G9 523 aaKnown RBP30.7■■■□□ 2.51
HMGB1-205ENST00000399494 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP30.69■■■□□ 2.5
HMGB1-205ENST00000399494 ASIC1P78348 528 aa30.69■■■□□ 2.5
HMGB1-205ENST00000399494 SYNPOQ8N3V7 929 aa30.69■■■□□ 2.5
HMGB1-205ENST00000399494 SPPL2BQ8TCT7 592 aa30.69■■■□□ 2.5
HMGB1-205ENST00000399494 TRIM9Q9C026 710 aa30.69■■■□□ 2.5
HMGB1-205ENST00000399494 SMG9Q9H0W8 520 aaKnown RBP30.69■■■□□ 2.5
HMGB1-205ENST00000399494 THG1LQ9NWX6 298 aaKnown RBP30.69■■■□□ 2.5
HMGB1-205ENST00000399494 ADSSP30520 456 aa30.68■■■□□ 2.5
HMGB1-205ENST00000399494 HOXA6P31267 233 aa30.68■■■□□ 2.5
HMGB1-205ENST00000399494 HOXC13P31276 330 aa30.68■■■□□ 2.5
HMGB1-205ENST00000399494 TAF12Q16514 161 aa30.68■■■□□ 2.5
HMGB1-205ENST00000399494 ITPRIPL2Q3MIP1 535 aa30.68■■■□□ 2.5
HMGB1-205ENST00000399494 HEATR6Q6AI08 1181 aaKnown RBP30.68■■■□□ 2.5
HMGB1-205ENST00000399494 TMEM150AQ86TG1 271 aa30.68■■■□□ 2.5
HMGB1-205ENST00000399494 EFCAB13Q8IY85 973 aa30.68■■■□□ 2.5
HMGB1-205ENST00000399494 CMTM8Q8IZV2 173 aa30.68■■■□□ 2.5
HMGB1-205ENST00000399494 FSIP1Q8NA03 581 aa30.68■■■□□ 2.5
HMGB1-205ENST00000399494 GKN1Q9NS71 199 aa30.68■■■□□ 2.5
HMGB1-205ENST00000399494 SERTAD1Q9UHV2 236 aa30.68■■■□□ 2.5
HMGB1-205ENST00000399494 A0A1W2PQ27 194 aa30.67■■■□□ 2.5
HMGB1-205ENST00000399494 A0A1W2PQ64 194 aa30.67■■■□□ 2.5
HMGB1-205ENST00000399494 A0A1W2PQD8 194 aa30.67■■■□□ 2.5
HMGB1-205ENST00000399494 GOLGA6L4A6NEF3 574 aa30.67■■■□□ 2.5
HMGB1-205ENST00000399494 KPNA7A9QM74 516 aa30.67■■■□□ 2.5
HMGB1-205ENST00000399494 AFMP43652 599 aa30.67■■■□□ 2.5
HMGB1-205ENST00000399494 HVCN1Q96D96 273 aa30.67■■■□□ 2.5
HMGB1-205ENST00000399494 GCNAQ96QF7 691 aa30.67■■■□□ 2.5
HMGB1-205ENST00000399494 STRA6Q9BX79 667 aa30.67■■■□□ 2.5
HMGB1-205ENST00000399494 OLFML3Q9NRN5 406 aa30.67■■■□□ 2.5
HMGB1-205ENST00000399494 SEMA4GQ9NTN9 838 aa30.67■■■□□ 2.5
HMGB1-205ENST00000399494 FRMD3A2A2Y4 597 aa30.66■■■□□ 2.5
HMGB1-205ENST00000399494 GCNT3O95395 438 aa30.66■■■□□ 2.5
HMGB1-205ENST00000399494 F11P03951 625 aa30.66■■■□□ 2.5
HMGB1-205ENST00000399494 HMGA1P17096 107 aaKnown RBP30.66■■■□□ 2.5
HMGB1-205ENST00000399494 SYKP43405 635 aa30.66■■■□□ 2.5
HMGB1-205ENST00000399494 POSTNQ15063 836 aa30.66■■■□□ 2.5
HMGB1-205ENST00000399494 DCP1BQ8IZD4 617 aaKnown RBP30.66■■■□□ 2.5
HMGB1-205ENST00000399494 POMGNT1Q8WZA1 660 aa30.66■■■□□ 2.5
HMGB1-205ENST00000399494 FAM83CQ9BQN1 747 aa30.66■■■□□ 2.5
HMGB1-205ENST00000399494 ABI2Q9NYB9 513 aaPredicted RBP30.66■■■□□ 2.5
HMGB1-205ENST00000399494 USP25Q9UHP3 1055 aa30.66■■■□□ 2.5
HMGB1-205ENST00000399494 ZMYM5Q9UJ78 669 aa30.66■■■□□ 2.5
HMGB1-205ENST00000399494 HPSEQ9Y251 543 aa30.66■■■□□ 2.5
HMGB1-205ENST00000399494 PPP1R37O75864 691 aa30.65■■■□□ 2.5
HMGB1-205ENST00000399494 IL18RAPO95256 599 aa30.65■■■□□ 2.5
HMGB1-205ENST00000399494 SLFN14P0C7P3 912 aa30.65■■■□□ 2.5
HMGB1-205ENST00000399494 SV2CQ496J9 727 aa30.65■■■□□ 2.5
HMGB1-205ENST00000399494 NT5DC4Q86YG4 428 aa30.65■■■□□ 2.5
HMGB1-205ENST00000399494 C7orf25Q9BPX7 421 aa30.65■■■□□ 2.5
HMGB1-205ENST00000399494 TMLHEQ9NVH6 421 aa30.65■■■□□ 2.5
HMGB1-205ENST00000399494 PCDHB5Q9Y5E4 795 aa30.65■■■□□ 2.5
HMGB1-205ENST00000399494 NDUFA8P51970 172 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 NLRP12P59046 1061 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 CSRP2Q16527 193 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 WDR5BQ86VZ2 330 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 MAB21L3Q8N8X9 362 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 NETO1Q8TDF5 533 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 CNTNAP3BQ96NU0 1288 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 CNTNAP3Q9BZ76 1288 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 BLZF1Q9H2G9 400 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 CHMP5Q9NZZ3 219 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 CCL26Q9Y258 94 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 PCDHB13Q9Y5F0 798 aa30.64■■■□□ 2.5
HMGB1-205ENST00000399494 ACTN4O43707 911 aaKnown RBP30.63■■■□□ 2.49
HMGB1-205ENST00000399494 WNT7BP56706 349 aa30.63■■■□□ 2.49
HMGB1-205ENST00000399494 KCNA1Q09470 495 aa30.63■■■□□ 2.49
HMGB1-205ENST00000399494 ALCAMQ13740 583 aa30.63■■■□□ 2.49
HMGB1-205ENST00000399494 CNNM4Q6P4Q7 775 aa30.63■■■□□ 2.49
HMGB1-205ENST00000399494 STXBP4Q6ZWJ1 553 aa30.63■■■□□ 2.49
HMGB1-205ENST00000399494 ARHGAP30Q7Z6I6 1101 aaPredicted RBP30.63■■■□□ 2.49
HMGB1-205ENST00000399494 USP13Q92995 863 aaPredicted RBP30.63■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms