RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 NMRK2Q9NPI5 230 aa15.8■□□□□ 0.12
CBX3-202ENST00000396386 WHRNQ9P202 907 aa15.8■□□□□ 0.12
CBX3-202ENST00000396386 ASIC3Q9UHC3 531 aa15.8■□□□□ 0.12
CBX3-202ENST00000396386 R3HDM2Q9Y2K5 976 aaKnown RBP15.8■□□□□ 0.12
CBX3-202ENST00000396386 Q9Y3F1 56 aa15.8■□□□□ 0.12
CBX3-202ENST00000396386 F8VP50 259 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 SHOX2O60902 331 aaPredicted RBP15.79■□□□□ 0.12
CBX3-202ENST00000396386 KRT3P12035 628 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 CYP2B6P20813 491 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 PSMA2P25787 234 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 PTPN7P35236 360 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 ACTN2P35609 894 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 NDST1P52848 882 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 PMS2P54278 862 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 EIF3BP55884 814 aaKnown RBP15.79■□□□□ 0.12
CBX3-202ENST00000396386 COPS2P61201 443 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 ADAM17P78536 824 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 SKOR1P84550 965 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 CNGA2Q16280 664 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 CCNG2Q16589 344 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 ODF2Q5BJF6 829 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 KCTD16Q68DU8 428 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 CHADLQ6NUI6 762 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 XYLT1Q86Y38 959 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 BEST2Q8NFU1 509 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 OR2W6PQ8NHA6 318 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 FNIP1Q8TF40 1166 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 RNF25Q96BH1 459 aaPredicted RBP15.79■□□□□ 0.12
CBX3-202ENST00000396386 HEXIM2Q96MH2 286 aaKnown RBP15.79■□□□□ 0.12
CBX3-202ENST00000396386 TRIM6Q9C030 488 aaPredicted RBP15.79■□□□□ 0.12
CBX3-202ENST00000396386 CDHR5Q9HBB8 845 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 KIAA1257Q9ULG3 409 aa15.79■□□□□ 0.12
CBX3-202ENST00000396386 TRIP12Q14669 1992 aaPredicted RBP15.79■□□□□ 0.12
CBX3-202ENST00000396386 ERBB2P04626 1255 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 TCF4P15884 667 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 PDCLQ13371 301 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 ZNF268Q14587 947 aaPredicted RBP15.78■□□□□ 0.12
CBX3-202ENST00000396386 RGMBQ6NW40 437 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 KDM7AQ6ZMT4 941 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 POLNQ7Z5Q5 900 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 IFNL1Q8IU54 200 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 IPO4Q8TEX9 1081 aaKnown RBP15.78■□□□□ 0.12
CBX3-202ENST00000396386 DNAJB3Q8WWF6 145 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 SNF8Q96H20 258 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 NT5C1AQ9BXI3 368 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 METTL5Q9NRN9 209 aaKnown RBP15.78■□□□□ 0.12
CBX3-202ENST00000396386 TJP2Q9UDY2 1190 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 SCN1AP35498 2009 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 PI4K2BG5E9Z4 385 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 NR1D1P20393 614 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 RFC1P35251 1148 aaPredicted RBP15.78■□□□□ 0.12
CBX3-202ENST00000396386 GABRB2P47870 512 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 IRX5P78411 483 aaPredicted RBP15.78■□□□□ 0.12
CBX3-202ENST00000396386 HIC1Q14526 733 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 SLMAPQ14BN4 828 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 SNX17Q15036 470 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 STILQ15468 1287 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 DENND2CQ68D51 928 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 SPOCD1Q6ZMY3 1216 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 LRRC52Q8N7C0 313 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 ATL2Q8NHH9 583 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 JOSD2Q8TAC2 188 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 PABPC3Q9H361 631 aaKnown RBP15.78■□□□□ 0.12
CBX3-202ENST00000396386 NXF3Q9H4D5 531 aaKnown RBP15.78■□□□□ 0.12
CBX3-202ENST00000396386 CNTN3Q9P232 1028 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 TUBGCP4Q9UGJ1 667 aa15.78■□□□□ 0.12
CBX3-202ENST00000396386 PIN4Q9Y237 131 aaKnown RBP15.78■□□□□ 0.12
CBX3-202ENST00000396386 C17orf102A2RUQ5 167 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 TNPO2O14787 897 aaKnown RBP15.77■□□□□ 0.11
CBX3-202ENST00000396386 RPS6KA5O75582 802 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 RECQL4O94761 1208 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 TJP3O95049 919 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 SLC10A3P09131 477 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 NUDT17P0C025 328 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 ATF2P15336 505 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 ATF7P17544 494 aaPredicted RBP15.77■□□□□ 0.11
CBX3-202ENST00000396386 BEX3Q00994 111 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 IFFO1Q0D2I5 559 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 ATP13A4Q4VNC1 1196 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 DNAJC21Q5F1R6 531 aaKnown RBP15.77■□□□□ 0.11
CBX3-202ENST00000396386 AGBL2Q5U5Z8 902 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 MFSD7Q6UXD7 560 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 ANKS1BQ7Z6G8 1248 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 MCRS1Q96EZ8 462 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 ZMAT2Q96NC0 199 aaKnown RBP15.77■□□□□ 0.11
CBX3-202ENST00000396386 CAPS2Q9BXY5 557 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 MIS12Q9H081 205 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 ZFYVE28Q9HCC9 887 aa15.77■□□□□ 0.11
CBX3-202ENST00000396386 LRRD1A4D1F6 860 aa15.76■□□□□ 0.11
CBX3-202ENST00000396386 TREHO43280 583 aa15.76■□□□□ 0.11
CBX3-202ENST00000396386 TOMM70O94826 608 aa15.76■□□□□ 0.11
CBX3-202ENST00000396386 KRT7P08729 469 aa15.76■□□□□ 0.11
CBX3-202ENST00000396386 GNAT1P11488 350 aa15.76■□□□□ 0.11
CBX3-202ENST00000396386 GPD2P43304 727 aa15.76■□□□□ 0.11
CBX3-202ENST00000396386 CAV1Q03135 178 aa15.76■□□□□ 0.11
CBX3-202ENST00000396386 LMNB2Q03252 620 aa15.76■□□□□ 0.11
CBX3-202ENST00000396386 ZBTB6Q15916 424 aa15.76■□□□□ 0.11
CBX3-202ENST00000396386 FSCN1Q16658 493 aaKnown RBP15.76■□□□□ 0.11
CBX3-202ENST00000396386 HADHQ16836 314 aaKnown RBP15.76■□□□□ 0.11
CBX3-202ENST00000396386 LCLAT1Q6UWP7 414 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms