RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 GARTP22102 1010 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 ATP11AP98196 1134 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 OGDHQ02218 1023 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 CUL2Q13617 745 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 CAPSQ13938 189 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 ABRAQ8N0Z2 381 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 EXD1Q8NHP7 514 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 CFAP57Q96MR6 1250 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 SLITRK1Q96PX8 696 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 MAK16Q9BXY0 300 aaKnown RBP17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 INO80BQ9C086 356 aaPredicted RBP17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 PORCNQ9H237 461 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 NUB1Q9Y5A7 615 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 CST3P01034 146 aaPredicted RBP17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 C4BPAP04003 597 aaKnown RBP17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 ORC1Q13415 861 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 ACVR2BQ13705 512 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 Q3C1V9 767 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 WDR72Q3MJ13 1102 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 LIN9Q5TKA1 542 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 LBX2Q6XYB7 198 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 ENOSF1Q7L5Y1 443 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 RBBP8NLQ8NC74 664 aaPredicted RBP17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 MCEEQ96PE7 176 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 LRRC37BQ96QE4 947 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 KLF6Q99612 283 aaPredicted RBP17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 LBHD1Q9BQE6 289 aaPredicted RBP17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 PLCD4Q9BRC7 762 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 C17orf75Q9HAS0 396 aa17.13■□□□□ 0.33
NKX3-1-201ENST00000380871 GOLGA8RI6L899 631 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 NEBLO76041 1014 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 KRT19P08727 400 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 WEE2P0C1S8 567 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 T-ENOLP0DO92 83 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 EPHB2P29323 1055 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 DYNLT1P63172 113 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 PLEKHA7Q6IQ23 1121 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 RELL1Q8IUW5 271 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 CEP120Q8N960 986 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 TRIM11Q96F44 468 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 TXNRD2Q9NNW7 524 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 NXF1Q9UBU9 619 aaKnown RBP17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 ACTL7BQ9Y614 415 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 FARP2O94887 1054 aaPredicted RBP17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 PDIA2Q13087 525 aaKnown RBP17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 MAB21L3Q8N8X9 362 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 MTMR12Q9C0I1 747 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 ASCC2Q9H1I8 757 aaPredicted RBP17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 ALG13Q9NP73 1137 aaKnown RBP17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 STARD13Q9Y3M8 1113 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 FER1L6Q2WGJ9 1857 aa17.12■□□□□ 0.33
NKX3-1-201ENST00000380871 H0Y3Z8 333 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 PLCB3Q01970 1234 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 OVGP1Q12889 678 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 BBOF1Q8ND07 529 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 CHST13Q8NET6 341 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 SMC6Q96SB8 1091 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 NFASCO94856 1347 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 KIF1CO43896 1103 aaKnown RBP17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 ABHD2P08910 425 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 KRT4P19013 534 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 SSTR1P30872 391 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 NCOA4Q13772 614 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 SPARCL1Q14515 664 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 EAPPQ56P03 285 aaPredicted RBP17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 PLEKHG4Q58EX7 1191 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 GPC2Q8N158 579 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 FEZF2Q8TBJ5 459 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 DHX33Q9H6R0 707 aaKnown RBP17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 NPHS2Q9NP85 383 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 PDGFCQ9NRA1 345 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 MAFBQ9Y5Q3 323 aaPredicted RBP17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 POLR2AP24928 1970 aaKnown RBP17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 EDF1O60869 148 aaKnown RBP17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 NRLP54845 237 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 SETDB1Q15047 1291 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 MSS51Q4VC12 460 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 ANKRD22Q5VYY1 191 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 TRIM68Q6AZZ1 485 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 ZNF677Q86XU0 584 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 ALLCQ8N6M5 410 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 FAM13CQ8NE31 585 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 SEPT1Q8WYJ6 367 aa17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 SLC7A6OSQ96CW6 309 aaPredicted RBP17.11■□□□□ 0.33
NKX3-1-201ENST00000380871 KIAA1217Q5T5P2 1943 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 SGK1O00141 431 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 ABL2P42684 1182 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 CLCN3P51790 818 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 YARSP54577 528 aaKnown RBP17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 GDF10P55107 478 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 SLC8A3P57103 927 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 GPX6P59796 221 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 SMTNL2Q2TAL5 461 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 LVRNQ6Q4G3 990 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 OTOAQ7RTW8 1153 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 TTC8Q8TAM2 541 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 LRRC8CQ8TDW0 803 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 C10orf82Q8WW14 230 aa17.1■□□□□ 0.33
NKX3-1-201ENST00000380871 LRMDAQ9H2I8 198 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms