RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 A0A0G2JND7 137 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ENO4A6NNW6 628 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 BTBD18B2RXH4 712 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 MCIDASD6RGH6 385 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 M0R3G1 203 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 LIN7AO14910 233 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 MAGEB2O15479 319 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 CREB1P16220 341 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 TMEM11P17152 192 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 SLC7A2P52569 658 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 NUP107P57740 925 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 GTF2IP78347 998 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 LRRC63Q05C16 580 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 SGCGQ13326 291 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PDIA6Q15084 440 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF792Q3KQV3 632 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PGM2L1Q6PCE3 622 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PARGQ86W56 976 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF280BQ86YH2 543 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 LRRC20Q8TCA0 184 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 LENG1Q96BZ8 264 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 THAP11Q96EK4 314 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 MEIS3Q99687 375 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 DCUN1D5Q9BTE7 237 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 CCDC134Q9H6E4 229 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ELOVL2Q9NXB9 296 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 LRWD1Q9UFC0 647 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 DNAJC12Q9UKB3 198 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PCDHB15Q9Y5E8 787 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 CASC3O15234 703 aaKnown RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PSMA2P25787 234 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 QARSP47897 775 aaKnown RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 DNASE1L1P49184 302 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ALDH3A2P51648 485 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ATXN1P54253 815 aaKnown RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PAK1Q13153 545 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 GALNT3Q14435 633 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF846Q147U1 533 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 C1orf146Q5VVC0 180 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 IQSEC1Q6DN90 963 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 FAM173BQ6P4H8 233 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 LCORLQ8N3X6 602 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 CBX8Q9HC52 389 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 INTS9Q9NV88 658 aaKnown RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PRKAG3Q9UGI9 489 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 CDC23Q9UJX2 597 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 AP4S1Q9Y587 144 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 TTC21BQ7Z4L5 1316 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 hCG_1642624A0A1W2PR95 340 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 H3BMM5 538 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PLOD2O00469 737 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 TRIM66O15016 1216 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 SGCEO43556 437 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 BMP10O95393 424 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 FGAP02671 866 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 RAB4AP20338 218 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 NUDT2P50583 147 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PSMD4P55036 377 aaKnown RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 EIF2B1Q14232 305 aaKnown RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 C15orf59Q2T9L4 293 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 SPAG16Q8N0X2 631 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF615Q8N8J6 731 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 USP33Q8TEY7 942 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 MAGOHBQ96A72 148 aaKnown RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 VPS33AQ96AX1 596 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ARMC5Q96C12 935 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 CYFIP2Q96F07 1278 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ERO1AQ96HE7 468 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 MTA3Q9BTC8 594 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PCIF1Q9H4Z3 704 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 NRDE2Q9H7Z3 1164 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 RGS18Q9NS28 235 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 MCUBQ9NWR8 336 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 CHPF2Q9P2E5 772 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ADAM30Q9UKF2 790 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PCP4L1A6NKN8 68 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 INPP4BO15327 924 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ZSCAN5DPP0CG00 497 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 HIBADHP31937 336 aaKnown RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 MAGEA2P43356 314 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 CDH13P55290 713 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 MGAT5BQ3V5L5 792 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 DENND5AQ6IQ26 1287 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 PRR23BQ6ZRT6 265 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 IKBIPQ70UQ0 350 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 DSELQ8IZU8 1212 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 MYRIPQ8NFW9 859 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 TRPC4APQ8TEL6 797 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 ERP27Q96DN0 273 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 DTNBP1Q96EV8 351 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 MYCBPQ99417 103 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-202ENST00000375405 STRA6Q9BX79 667 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 THAP9Q9H5L6 903 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 SCN3BQ9NY72 215 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 HDAC6Q9UBN7 1215 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 CYTH4Q9UIA0 394 aa4.82□□□□□ -1.64
SCN1A-202ENST00000375405 SLCO1A2P46721 670 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 ARFIP2P53365 341 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 AMPD2Q01433 879 aa4.81□□□□□ -1.64
SCN1A-202ENST00000375405 CERKLQ49MI3 558 aaPredicted RBP4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms