RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 ITPKAP23677 461 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 RPL9P32969 192 aaKnown RBP9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 NAMPTP43490 491 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 GUCY2FP51841 1108 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 SPAG1Q07617 926 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 LMAN2Q12907 356 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 GPR17Q13304 367 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 SEZ6Q53EL9 994 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 USP39Q53GS9 565 aaKnown RBP9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 SLC23A3Q6PIS1 610 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 FBXL16Q8N461 479 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 CCDC33Q8N5R6 958 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 TSTD1Q8NFU3 115 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 OR10T2Q8NGX3 314 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 USP33Q8TEY7 942 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 ZBTB45Q96K62 511 aaPredicted RBP9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 CNOT6LQ96LI5 555 aaKnown RBP9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 JAKMIP1Q96N16 626 aaKnown RBP9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 ACO2Q99798 780 aaKnown RBP9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 C2orf40Q9H1Z8 148 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 CCDC86Q9H6F5 360 aaKnown RBP9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 CNTN3Q9P232 1028 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 PILRBQ9UKJ0 227 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 TPCN1Q9ULQ1 816 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 TNFSF13BQ9Y275 285 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 SNX14Q9Y5W7 946 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 PCDH15Q96QU1 1955 aa9.26□□□□□ -0.93
HMGB1P39-201ENST00000366304 MYO16Q9Y6X6 1858 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 THADAQ6YHU6 1953 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 H0Y626 953 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 TNFRSF10BO14763 440 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 SH3BP5O60239 455 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 TRIM16O95361 564 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 DEXIO95424 95 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 FTH1P19P0C7X4 201 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 CYP11B2P19099 503 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 RPS6KB1P23443 525 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 P2RY2P41231 377 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 GCGRP47871 477 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 ALDH1A3P47895 512 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 AARSP49588 968 aaKnown RBP eCLIP9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 SEC13P55735 322 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 YWHAHQ04917 246 aaPredicted RBP9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 SSRP1Q08945 709 aaKnown RBP9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 PLD1Q13393 1074 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 TOB2Q14106 344 aaPredicted RBP9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 ZNF423Q2M1K9 1284 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 GAB4Q2WGN9 574 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 SLC10A6Q3KNW5 377 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 MAP7D1Q3KQU3 841 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 C2orf27AQ580R0 203 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 PEAR1Q5VY43 1037 aaPredicted RBP9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 TXNDC8Q6A555 127 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 SLCO6A1Q86UG4 719 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 CATSPER3Q86XQ3 398 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 SYT12Q8IV01 421 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 DEFB119Q8N690 84 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 MAB21L3Q8N8X9 362 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 MCPH1Q8NEM0 835 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 APPL2Q8NEU8 664 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 DEPTORQ8TB45 409 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 GIPC2Q8TF65 315 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 ADAMTS14Q8WXS8 1223 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 CD101Q93033 1021 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 TNFRSF25Q93038 417 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 TARS2Q9BW92 718 aaKnown RBP9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 GTPBP2Q9BX10 602 aaKnown RBP9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 ECT2Q9H8V3 914 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 CAPN10Q9HC96 672 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 SLC38A7Q9NVC3 462 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 THG1LQ9NWX6 298 aaKnown RBP9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 ASB3Q9Y575 518 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 GON4LQ3T8J9 2241 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 PTPRDP23468 1912 aa9.25□□□□□ -0.93
HMGB1P39-201ENST00000366304 MARCH6O60337 910 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 TADA3O75528 432 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 GJB3O75712 270 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 F11P03951 625 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 CFIP05156 583 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 HMGB1P09429 215 aaKnown RBP9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 XRCC6P12956 609 aaKnown RBP eCLIP9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 HMGA1P17096 107 aaKnown RBP9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 PROZP22891 400 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 OPRD1P41143 372 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 PSMD2Q13200 908 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 NR5A1Q13285 461 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 KRT32Q14532 448 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 PTPAQ15257 358 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 TRIP6Q15654 476 aaKnown RBP9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 ECM1Q16610 540 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 FBXO43Q4G163 708 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 ARHGAP15Q53QZ3 475 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 GALNT17Q6IS24 598 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 TTC30AQ86WT1 665 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 SLFN12Q8IYM2 578 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 ACDQ96AP0 544 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 MTMR9Q96QG7 549 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 SLC22A12Q96S37 553 aa9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 CCDC94Q9BW85 323 aaPredicted RBP9.24□□□□□ -0.93
HMGB1P39-201ENST00000366304 NUSAP1Q9BXS6 441 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms