RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SF3B1O75533 1304 aaKnown RBP eCLIP9.79□□□□□ -0.848e-6■■■■■ 107
USP4-202ENST00000351842 TRAPPC3O43617 180 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 CYP2F1P24903 491 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 IRS1P35568 1242 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 RAD23BP54727 409 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 MLLT1Q03111 559 aaPredicted RBP9.78□□□□□ -0.84
USP4-202ENST00000351842 TRIM14Q14142 442 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 KIAA0319Q5VV43 1072 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 DAB2IPQ5VWQ8 1189 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 RSPO2Q6UXX9 243 aaPredicted RBP9.78□□□□□ -0.84
USP4-202ENST00000351842 CYP26C1Q6V0L0 522 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 EPS8L1Q8TE68 723 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 GIPC2Q8TF65 315 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 SHC3Q92529 594 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 TMEM176AQ96HP8 235 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 IGSF21Q96ID5 467 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 C16orf45Q96MC5 204 aaPredicted RBP9.78□□□□□ -0.84
USP4-202ENST00000351842 TCF25Q9BQ70 676 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 ZSWIM1Q9BR11 485 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 B3GNT5Q9BYG0 378 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 CWH43Q9H720 699 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 TMLHEQ9NVH6 421 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 TSPAN16Q9UKR8 245 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 BARX2Q9UMQ3 279 aaPredicted RBP9.78□□□□□ -0.84
USP4-202ENST00000351842 NCOR1O75376 2440 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 PFKMP08237 780 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 CDC25BP30305 580 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 PNPLA4P41247 253 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 GCNT1Q02742 428 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 KRT17Q04695 432 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 DSC1Q08554 894 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 ZFYVE27Q5T4F4 411 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 DENND1BQ6P3S1 775 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 IRF2BP2Q7Z5L9 587 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 LRRTM3Q86VH5 581 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 LRRC52Q8N7C0 313 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 SLC4A11Q8NBS3 891 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 B3GALNT2Q8NCR0 500 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 DDX27Q96GQ7 796 aaKnown RBP9.78□□□□□ -0.84
USP4-202ENST00000351842 KRT82Q9NSB4 513 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 SPG21Q9NZD8 308 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 IMPACTQ9P2X3 320 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 EPN1Q9Y6I3 576 aaPredicted RBP9.78□□□□□ -0.84
USP4-202ENST00000351842 ITIH6Q6UXX5 1313 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 LINC01553A4QN01 128 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 GRM6O15303 877 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 BAIAP3O94812 1187 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 URODP06132 367 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 ACO1P21399 889 aaKnown RBP9.78□□□□□ -0.84
USP4-202ENST00000351842 GRIK1P39086 918 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 CCZ1BP86790 482 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 CCZ1P86791 482 aaPredicted RBP9.78□□□□□ -0.84
USP4-202ENST00000351842 TSPY1Q01534 308 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 DUSP4Q13115 394 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 KCTD19Q17RG1 926 aaPredicted RBP9.78□□□□□ -0.84
USP4-202ENST00000351842 SGO2Q562F6 1265 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 DPY19L2P1Q6NXN4 242 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 MMS22LQ6ZRQ5 1243 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 VPS36Q86VN1 386 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 COLGALT1Q8NBJ5 622 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 POF1BQ8WVV4 589 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 FAM149B1Q96BN6 582 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 PCED1BQ96HM7 432 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 BTBD6Q96KE9 485 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 PCDHB18PQ96TA0 734 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 TTPALQ9BTX7 342 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 TRAIPQ9BWF2 469 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 HESX1Q9UBX0 185 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 STXBP5LQ9Y2K9 1186 aa9.78□□□□□ -0.84
USP4-202ENST00000351842 HIDE1A8MVS5 230 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 CILPO75339 1184 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 BEST1O76090 585 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 FERP16591 822 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 RPL9P32969 192 aaKnown RBP9.77□□□□□ -0.84
USP4-202ENST00000351842 CACNA2D1P54289 1103 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 ERVFC1P60507 584 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 ADCY1Q08828 1119 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 XKR4Q5GH76 650 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 ALKBH5Q6P6C2 394 aaKnown RBP9.77□□□□□ -0.84
USP4-202ENST00000351842 NT5DC4Q86YG4 428 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 FAM71AQ8IYT1 594 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 THEM5Q8N1Q8 247 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 AGPAT1Q99943 283 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 VN1R3Q9BXE9 311 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 NAA15Q9BXJ9 866 aaKnown RBP9.77□□□□□ -0.84
USP4-202ENST00000351842 ELAC1Q9H777 363 aaKnown RBP9.77□□□□□ -0.84
USP4-202ENST00000351842 DERAQ9Y315 318 aa9.77□□□□□ -0.84
USP4-202ENST00000351842 TTC28Q96AY4 2481 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 F8VP50 259 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 AP1G2O75843 785 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 NDUFA10O95299 355 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 CXCL14O95715 111 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 FTLP02792 175 aaPredicted RBP9.77□□□□□ -0.85
USP4-202ENST00000351842 SERPING1P05155 500 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 PTPN1P18031 435 aaKnown RBP9.77□□□□□ -0.85
USP4-202ENST00000351842 LRPAP1P30533 357 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 ATICP31939 592 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 MAGEA1P43355 309 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 PSMD5Q16401 504 aa9.77□□□□□ -0.85
USP4-202ENST00000351842 TAF12Q16514 161 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms