RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 IWS1Q96ST2 819 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 FOXP3Q9BZS1 431 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 SAR1AQ9NR31 198 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 NOMO3P69849 1222 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 LBRQ14739 615 aaKnown RBP23.53■■□□□ 1.36
TRIM28-202ENST00000341753 PPP1R15BQ5SWA1 713 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 FNBP1LQ5T0N5 605 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 BICD1Q96G01 975 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 PAFAH2Q99487 392 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 ZCWPW1Q9H0M4 648 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 MANSC1Q9H8J5 431 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 AGO4Q9HCK5 861 aaKnown RBP23.53■■□□□ 1.36
TRIM28-202ENST00000341753 PCDHB4Q9Y5E5 795 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 WASF2Q9Y6W5 498 aa23.53■■□□□ 1.36
TRIM28-202ENST00000341753 TNS1Q9HBL0 1735 aaKnown RBP23.52■■□□□ 1.36
TRIM28-202ENST00000341753 F8VP50 259 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 ZWINTO95229 277 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 LMNB2Q03252 620 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 DMP1Q13316 513 aaPredicted RBP23.52■■□□□ 1.36
TRIM28-202ENST00000341753 HIF1AQ16665 826 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 TKFCQ3LXA3 575 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 LRRC74BQ6ZQY2 392 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 TMC2Q8TDI7 906 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 TMEM120AQ9BXJ8 343 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 ST6GALNAC4Q9H4F1 302 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 MYOZ2Q9NPC6 264 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 LMNAP02545 664 aaKnown RBP23.52■■□□□ 1.36
TRIM28-202ENST00000341753 TNNI1P19237 187 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 HSD17B4P51659 736 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 ARFIP2P53365 341 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 TRAF1Q13077 416 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 MORF4L2Q15014 288 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 RBBP5Q15291 538 aaKnown RBP23.52■■□□□ 1.36
TRIM28-202ENST00000341753 PRAMEF18Q5VWM3 479 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 CEP128Q6ZU80 1094 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 PYROXD1Q8WU10 500 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 ASB3Q9Y575 518 aa23.52■■□□□ 1.36
TRIM28-202ENST00000341753 GNA15P30679 374 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 POLE2P56282 527 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 SGSM1Q2NKQ1 1148 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 BRDTQ58F21 947 aaPredicted RBP23.51■■□□□ 1.35
TRIM28-202ENST00000341753 CMPK2Q5EBM0 449 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 EFHC2Q5JST6 749 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 SYCP2LQ5T4T6 812 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 FOXB2Q5VYV0 432 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 SCARA3Q6AZY7 606 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 OR52E8Q6IFG1 317 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 C3orf62Q6ZUJ4 267 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 RHPN2Q8IUC4 686 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 NSL1Q96IY1 281 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 TRIM55Q9BYV6 548 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 SLC24A2Q9UI40 661 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 TBC1D12O60347 775 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 TJP3O95049 919 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 PSMG1O95456 288 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 HLA-DRAP01903 254 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 RAB27AP51159 221 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 CWF19L1Q69YN2 538 aaKnown RBP23.51■■□□□ 1.35
TRIM28-202ENST00000341753 IRGCQ6NXR0 463 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 WDR83Q9BRX9 315 aaKnown RBP23.51■■□□□ 1.35
TRIM28-202ENST00000341753 TSSK1BQ9BXA7 367 aa23.51■■□□□ 1.35
TRIM28-202ENST00000341753 MRPL47Q9HD33 250 aaKnown RBP23.51■■□□□ 1.35
TRIM28-202ENST00000341753 ATP2A1O14983 1001 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 GDF10P55107 478 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 MTMR1Q13613 665 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 CCDC142Q17RM4 750 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 NBPF20Q3BBV1 942 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 MDH1BQ5I0G3 518 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 WDR44Q5JSH3 913 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 SPOCD1Q6ZMY3 1216 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 KBTBD2Q8IY47 623 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 GPD1LQ8N335 351 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 FEZF2Q8TBJ5 459 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 TTC17Q96AE7 1141 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 TAS2R1Q9NYW7 299 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 LRCH1Q9Y2L9 728 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 PTPRJQ12913 1337 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 RPS6P62753 249 aaKnown RBP23.5■■□□□ 1.35
TRIM28-202ENST00000341753 THOC5Q13769 683 aaKnown RBP23.5■■□□□ 1.35
TRIM28-202ENST00000341753 SYTL5Q8TDW5 730 aaPredicted RBP23.5■■□□□ 1.35
TRIM28-202ENST00000341753 DDX50Q9BQ39 737 aaKnown RBP23.5■■□□□ 1.35
TRIM28-202ENST00000341753 TCEAL9Q9UHQ7 104 aa23.5■■□□□ 1.35
TRIM28-202ENST00000341753 AMPD1P23109 780 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 ACOT2P49753 483 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 VCPP55072 806 aaKnown RBP23.49■■□□□ 1.35
TRIM28-202ENST00000341753 SLC34A1Q06495 639 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 ZNF252P-AS1Q0IIN9 211 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 MTMR2Q13614 643 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 PLEKHA7Q6IQ23 1121 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 SAMD7Q7Z3H4 446 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 FAM83AQ86UY5 434 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 RCOR2Q8IZ40 523 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 SH3TC2Q8TF17 1288 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 STMN2Q93045 179 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 MCEEQ96PE7 176 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 SENP7Q9BQF6 1050 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 VCXQ9H320 206 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 KCNK13Q9HB14 408 aa23.49■■□□□ 1.35
TRIM28-202ENST00000341753 PPP1R1BQ9UD71 204 aaPredicted RBP23.49■■□□□ 1.35
TRIM28-202ENST00000341753 SCOCQ9UIL1 159 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms