RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 OR2W6PQ8NHA6 318 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 ZNF671Q8TAW3 534 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 RMND5BQ96G75 393 aaPredicted RBP13.33□□□□□ -0.28
USP47-202ENST00000339865 HMG20AQ9NP66 347 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 TOPORSQ9NS56 1045 aaPredicted RBP13.33□□□□□ -0.28
USP47-202ENST00000339865 RABGEF1Q9UJ41 708 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 GRID1Q9ULK0 1009 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 PADI4Q9UM07 663 aa13.33□□□□□ -0.28
USP47-202ENST00000339865 KPNA5O15131 536 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 GRIK1P39086 918 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 CCT8P50990 548 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 SEC24CP53992 1094 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 RPS8P62241 208 aaKnown RBP13.32□□□□□ -0.28
USP47-202ENST00000339865 IDI1Q13907 227 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 MTFR1Q15390 333 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 LEMD2Q8NC56 503 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 FOXP3Q9BZS1 431 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 CORO7P57737 925 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.32□□□□□ -0.28
USP47-202ENST00000339865 ORC2Q13416 577 aaPredicted RBP13.32□□□□□ -0.28
USP47-202ENST00000339865 USF2Q15853 346 aaPredicted RBP13.32□□□□□ -0.28
USP47-202ENST00000339865 CLEC4GQ6UXB4 293 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 DCLRE1BQ9H816 532 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 LRPAP1P30533 357 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 PEX5P50542 639 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 ARHGDIBP52566 201 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 TAP1Q03518 808 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 ZBTB49Q6ZSB9 765 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 GLYCTKQ8IVS8 523 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 MAML3Q96JK9 1138 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 ZMYM4Q5VZL5 1548 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 TIMM44O43615 452 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 CYP4Z1Q86W10 505 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 LRRC6Q86X45 466 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 SLC30A5Q8TAD4 765 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 PRRG3Q9BZD7 231 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 FAM192AQ9GZU8 254 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 HEY2Q9UBP5 337 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 SLC30A1Q9Y6M5 507 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 YTHDC2Q9H6S0 1430 aaKnown RBP13.32□□□□□ -0.28
USP47-202ENST00000339865 ARAP1Q96P48 1450 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 SMCO3A2RU48 225 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 CCDC182A6NF36 153 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 USP27XA6NNY8 438 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 TGFBR2P37173 567 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 NSUN7Q8NE18 718 aaKnown RBP13.32□□□□□ -0.28
USP47-202ENST00000339865 ARHGEF26Q96DR7 871 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 MUC3BQ9H195 1237 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 USP19O94966 1318 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 NEURL1BA8MQ27 555 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 PDHA2P29803 388 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 ARHGEF7Q14155 803 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 TRIM72Q6ZMU5 477 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 ZSCAN18Q8TBC5 510 aaPredicted RBP13.32□□□□□ -0.28
USP47-202ENST00000339865 SH3TC2Q8TF17 1288 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 RORBQ92753 470 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 FAM217BQ9NTX9 383 aaPredicted RBP13.32□□□□□ -0.28
USP47-202ENST00000339865 MCUBQ9NWR8 336 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 ZBTB1Q9Y2K1 713 aa13.32□□□□□ -0.28
USP47-202ENST00000339865 EIF2AK4Q9P2K8 1649 aaKnown RBP13.32□□□□□ -0.28
USP47-202ENST00000339865 ARHGEF11O15085 1522 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 SEMA3EO15041 775 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 CLTBP09497 229 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 CYP2D6P10635 497 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 NLRP10Q86W26 655 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 E2F7Q96AV8 911 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 PIGSQ96S52 555 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 S100A13Q99584 98 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 ETAA1Q9NY74 926 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 SNX8Q9Y5X2 465 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 ATP9AO75110 1047 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 CHRM3P20309 590 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 AVPR1AP37288 418 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 SCRN3Q0VDG4 424 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 ARID3BQ8IVW6 561 aaPredicted RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 DHX40Q8IX18 779 aaKnown RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 RUBCNQ92622 972 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 TPD52L3Q96J77 140 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 RPS6KB2Q9UBS0 482 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 ITGB1BP2Q9UKP3 347 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 EXTL3O43909 919 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 KHDRBS3O75525 346 aaKnown RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 TCEA3O75764 348 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 NQO1P15559 274 aaKnown RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 EXOSC10Q01780 885 aaKnown RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 FAM83BQ5T0W9 1011 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 BTBD8Q5XKL5 378 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 FBXO31Q5XUX0 539 aaPredicted RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 ANKS6Q68DC2 871 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 ERICH5Q6P6B1 374 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 SYDE1Q6ZW31 735 aaPredicted RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 TRIM48Q8IWZ4 208 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 CYP4Z2PQ8N1L4 340 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 PABPC5Q96DU9 382 aaKnown RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 B3GALT6Q96L58 329 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 EYA1Q99502 592 aa13.31□□□□□ -0.28
USP47-202ENST00000339865 KLF6Q99612 283 aaPredicted RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 ILKAPQ9H0C8 392 aaPredicted RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 TNPO2O14787 897 aaKnown RBP13.31□□□□□ -0.28
USP47-202ENST00000339865 POLBP06746 335 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms