RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 GCNT1Q02742 428 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 AGAP9Q5VTM2 703 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 IER5Q5VY09 327 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 LCA5Q86VQ0 697 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 SLC44A5Q8NCS7 719 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 PPP2R3CQ969Q6 453 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 COPG1Q9Y678 874 aaKnown RBP10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 HNRNPH3P31942 346 aaKnown RBP10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 RECQLP46063 649 aaPredicted RBP10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 TMEM259Q4ZIN3 620 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 RMDN2Q96LZ7 410 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 SLC26A11Q86WA9 606 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 RAB42Q8N4Z0 105 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 ARHGEF38Q9NXL2 777 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 PCDHGB4Q9UN71 923 aa10.71□□□□□ -0.69
CCDC88A-202ENST00000336838 PURAQ00577 322 aaKnown RBP10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 PCNX4Q63HM2 1172 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 USP6NLQ92738 828 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 COG4Q9H9E3 785 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 ZNF556Q9HAH1 456 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 CYP3A43Q9HB55 503 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 SNTNA6NMZ2 147 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 VPS4BO75351 444 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 ATP6V1G2O95670 118 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 PRKCBP05771 671 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 SWSAP1Q6NVH7 229 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 KYAT3Q6YP21 454 aaKnown RBP10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 TMPRSS6Q8IU80 811 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 PLD3Q8IV08 490 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 VPS37AQ8NEZ2 397 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 ARHGEF1Q92888 912 aaKnown RBP10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 SCN3BQ9NY72 215 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 PCYOX1Q9UHG3 505 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 LRFN2Q9ULH4 789 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 C15orf41Q9Y2V0 281 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 CLUHO75153 1309 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 LOC102724159A0A0B4J2E5 919 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 TNFAIP8O95379 198 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 RGS4P49798 205 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 SLC26A2P50443 739 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 BIRC2Q13490 618 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 PWP2Q15269 919 aaKnown RBP10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 WDR72Q3MJ13 1102 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 SWT1Q5T5J6 900 aaKnown RBP10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 DLGAP2Q9P1A6 1054 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 AFF2P51816 1311 aa10.71□□□□□ -0.7
CCDC88A-202ENST00000336838 ABL1P00519 1130 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 WEE2P0C1S8 567 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 AKR1B1P15121 316 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 PDGFRAP16234 1089 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 RAD51Q06609 339 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 SV2CQ496J9 727 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 GPR141Q7Z602 305 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 CHST13Q8NET6 341 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 DRG1Q9Y295 367 aaKnown RBP10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 AAR2Q9Y312 384 aaKnown RBP10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 HNRNPCL2B2RXH8 293 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 NAMPTP43490 491 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 SPATA33Q96N06 139 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 DAGLAQ9Y4D2 1042 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 SPDYE2BA6NHP3 402 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 CAMTA2O94983 1202 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 SPDYE6P0CI01 402 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 ALADP13716 330 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 PSMC3P17980 439 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 NMT1P30419 496 aaKnown RBP10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 SNX17Q15036 470 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 SLC45A4Q5BKX6 768 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 KIAA1841Q6NSI8 718 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 NT5DC4Q86YG4 428 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 CAPN6Q9Y6Q1 641 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 TRDMT1O14717 391 aaKnown RBP10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 PRKCIP41743 596 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 XIAPP98170 497 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 RUNX1T1Q06455 604 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 ZNF235Q14590 738 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 SEC23AQ15436 765 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 DDIASQ8IXT1 998 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 CCDC24Q8N4L8 307 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 RIOX1Q9H6W3 641 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 JMJD4Q9H9V9 463 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 SLC24A3Q9HC58 644 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 THAP1Q9NVV9 213 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 RRN3Q9NYV6 651 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 PCSK1NQ9UHG2 260 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 FIS1Q9Y3D6 152 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 F9P00740 461 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 ZNF844Q08AG5 666 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 HORMAD1Q86X24 394 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 KATNAL1Q9BW62 490 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 NMRK1Q9NWW6 199 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 CLRN2A0PK11 232 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 RBP3P10745 1247 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 CYP2C9P11712 490 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 ADCK1Q86TW2 530 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 PCMTD2Q9NV79 361 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 ZNF197O14709 1029 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 AKAP10O43572 662 aa10.7□□□□□ -0.7
CCDC88A-202ENST00000336838 ADCY3O60266 1144 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms