RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 KBTBD3Q8NAB2 608 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ERLEC1Q96DZ1 483 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 KLHL15Q96M94 604 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 NUDT9Q9BW91 350 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ACAD9Q9H845 621 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 CNOT10Q9H9A5 744 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 OR14I1A6ND48 311 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 MEI4A8MW99 385 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ACAT1P24752 427 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 GNA11P29992 359 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 NCAPHQ15003 741 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ZCWPW2Q504Y3 356 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 PERM1Q5SV97 790 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ZCCHC12Q6PEW1 402 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 SKA3Q8IX90 412 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 GPBP1L1Q9HC44 474 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ABCB9Q9NP78 766 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 LIN7CQ9NUP9 197 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 CYP39A1Q9NYL5 469 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 PPP2R2CQ9Y2T4 447 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 LIN7AO14910 233 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 DGKIO75912 1065 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ITGB3P05106 788 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 F8A1P23610 371 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 MECP2P51608 486 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 TBX4P57082 545 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 RAD51Q06609 339 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ADSSL1Q8N142 457 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 EMILIN2Q9BXX0 1053 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 EXD2Q9NVH0 621 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 POLR3EQ9NVU0 708 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF69Q9UC07 566 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ARMCX3Q9UH62 379 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 ITGB1BP2Q9UKP3 347 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 USP15Q9Y4E8 981 aaPredicted RBP7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 SYNRGQ9UMZ2 1314 aa7.94□□□□□ -1.14
LIMCH1-201ENST00000313860 K7EPK0 472 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 KIAA0355O15063 1070 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 SPTLC1O15269 473 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 RIPK2O43353 540 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 VAMP4O75379 141 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF14P17017 642 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 GALNT3Q14435 633 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 DCST2Q5T1A1 773 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 EIF3MQ7L2H7 374 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 ADCK2Q7Z695 626 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 DIS3L2Q8IYB7 885 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 FAM71E2Q8N5Q1 922 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 MKL1Q969V6 931 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 APOL4Q9BPW4 351 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 BRD7Q9NPI1 651 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 VSX1Q9NZR4 365 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 UVRAGQ9P2Y5 699 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 PA2G4Q9UQ80 394 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 CLEC11AQ9Y240 323 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 MROH7Q68CQ1 1323 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 ACSL3O95573 720 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 HSD17B2P37059 387 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 TAF13Q15543 124 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF530Q6P9A1 599 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 CHRDL2Q6WN34 429 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 TTLL7Q6ZT98 887 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 HACE1Q8IYU2 909 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 KIF2BQ8N4N8 673 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 CYFIP2Q96F07 1278 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 ITCHQ96J02 903 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 TMEM68Q96MH6 324 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 TREM1Q9NP99 234 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 WDR35Q9P2L0 1181 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 ERVK-11Q9UQG0 969 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 PLAAQ9Y263 795 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 GRIP1Q9Y3R0 1128 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 KLF18A0A0U1RQI7 1052 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 OR6C6A6NF89 314 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 TUBAL3A6NHL2 446 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 MYL5Q02045 173 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 GUK1Q16774 197 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 COBLL1Q53SF7 1204 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 ZNF471Q9BX82 626 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 C1orf112Q9NSG2 853 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 RBAKQ9NYW8 714 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 IFNA10P01566 189 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 IFNA4P05014 189 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 TCF7P36402 384 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 TTC39BQ5VTQ0 682 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 PIK3C3Q8NEB9 887 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 USP13Q92995 863 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 TDRD1Q9BXT4 1180 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 TNKS2Q9H2K2 1166 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 SLC12A5Q9H2X9 1139 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 MOB1AQ9H8S9 216 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 CEP72Q9P209 647 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 VWA3AA6NCI4 1184 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 E5RI56 91 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 PRKCHP24723 683 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 ARFIP2P53365 341 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 AMPD2Q01433 879 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 CDH18Q13634 790 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 PITRM1Q5JRX3 1037 aa7.93□□□□□ -1.14
LIMCH1-201ENST00000313860 RPTNQ6XPR3 784 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms