RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 SUCLA2Q9P2R7 463 aaPredicted RBP11.48□□□□□ -0.57
LSM3-201ENST00000306024 FRMPD4Q14CM0 1322 aa11.48□□□□□ -0.57
LSM3-201ENST00000306024 GFPT2O94808 682 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 HAUS5O94927 633 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 PSMC2P35998 433 aaKnown RBP11.47□□□□□ -0.57
LSM3-201ENST00000306024 PDE1CQ14123 709 aaPredicted RBP11.47□□□□□ -0.57
LSM3-201ENST00000306024 GRB14Q14449 540 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 SPARCL1Q14515 664 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 TRIP13Q15645 432 aaPredicted RBP11.47□□□□□ -0.57
LSM3-201ENST00000306024 ARSHQ5FYA8 562 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 LRRC74BQ6ZQY2 392 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 ANO5Q75V66 913 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 WRAP73Q9P2S5 460 aaPredicted RBP11.47□□□□□ -0.57
LSM3-201ENST00000306024 PHIPQ8WWQ0 1821 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 NKRFO15226 690 aaKnown RBP eCLIP11.47□□□□□ -0.57
LSM3-201ENST00000306024 ZNF862O60290 1169 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 PEX11AO75192 247 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 TJP3O95049 919 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 DLATP10515 647 aaKnown RBP11.47□□□□□ -0.57
LSM3-201ENST00000306024 LRRC36Q1X8D7 754 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 P3H1Q32P28 736 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 ZNF792Q3KQV3 632 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 EFCAB12Q6NXP0 572 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 ARL10Q8N8L6 244 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 CD99L2Q8TCZ2 262 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 BAP1Q92560 729 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 RNF25Q96BH1 459 aaPredicted RBP11.47□□□□□ -0.57
LSM3-201ENST00000306024 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.47□□□□□ -0.57
LSM3-201ENST00000306024 TMCO1Q9UM00 188 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 LGALS2P05162 132 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 AKR1A1P14550 325 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 ADCY8P40145 1251 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 CPT1AP50416 773 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 CLCN3P51790 818 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 MAPK6Q16659 721 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 MAP7D1Q3KQU3 841 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 MFSD4BQ5TF39 518 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 CCDC137Q6PK04 289 aaKnown RBP11.47□□□□□ -0.57
LSM3-201ENST00000306024 GSTA5Q7RTV2 222 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 REM2Q8IYK8 340 aaPredicted RBP11.47□□□□□ -0.57
LSM3-201ENST00000306024 LRRC15Q8TF66 581 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 UBN1Q9NPG3 1134 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 NDE1Q9NXR1 346 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 DIS3Q9Y2L1 958 aaKnown RBP11.47□□□□□ -0.57
LSM3-201ENST00000306024 TRIM17Q9Y577 477 aa11.47□□□□□ -0.57
LSM3-201ENST00000306024 ARHGAP42A6NI28 874 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 NUDT17P0C025 328 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 INSRRP14616 1297 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 TNNI1P19237 187 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 SLC26A2P50443 739 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 BEX3Q00994 111 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 ZBTB33Q86T24 672 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 PPP1R13LQ8WUF5 828 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 SCFD1Q8WVM8 642 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 PHACTR1Q9C0D0 580 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 GREB1LQ9C091 1923 aaPredicted RBP11.46□□□□□ -0.57
LSM3-201ENST00000306024 ATAD5Q96QE3 1844 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 PAPPA2Q9BXP8 1791 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 PDXKO00764 312 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 ACTN1P12814 892 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 ELNP15502 786 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 MAPK7Q13164 816 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 THOC5Q13769 683 aaKnown RBP11.46□□□□□ -0.57
LSM3-201ENST00000306024 AUHQ13825 339 aaKnown RBP11.46□□□□□ -0.57
LSM3-201ENST00000306024 MESDQ14696 234 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 DUSP28Q4G0W2 176 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 HSP90AA5PQ58FG0 334 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 GRAMD4Q6IC98 578 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 C17orf99Q6UX52 265 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 EXOC3L1Q86VI1 746 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 ZNF653Q96CK0 615 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 MPP4Q96JB8 637 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 GPR20Q99678 358 aa11.46□□□□□ -0.57
LSM3-201ENST00000306024 ADCY3O60266 1144 aa11.46□□□□□ -0.58
LSM3-201ENST00000306024 CCDC22O60826 627 aa11.46□□□□□ -0.58
LSM3-201ENST00000306024 KRT36O76013 467 aa11.46□□□□□ -0.58
LSM3-201ENST00000306024 SKIV2L2P42285 1042 aaKnown RBP11.46□□□□□ -0.58
LSM3-201ENST00000306024 NPTX2P47972 431 aa11.46□□□□□ -0.58
LSM3-201ENST00000306024 SLC34A1Q06495 639 aa11.46□□□□□ -0.58
LSM3-201ENST00000306024 PARP6Q2NL67 630 aa11.46□□□□□ -0.58
LSM3-201ENST00000306024 PRPF31Q8WWY3 499 aaKnown RBP11.46□□□□□ -0.58
LSM3-201ENST00000306024 LENG1Q96BZ8 264 aaPredicted RBP11.46□□□□□ -0.58
LSM3-201ENST00000306024 ROPN1BQ9BZX4 212 aaPredicted RBP11.46□□□□□ -0.58
LSM3-201ENST00000306024 ROPN1Q9HAT0 212 aaPredicted RBP11.46□□□□□ -0.58
LSM3-201ENST00000306024 NPHS2Q9NP85 383 aa11.46□□□□□ -0.58
LSM3-201ENST00000306024 DNAJC25-GNG10A0A024R161 153 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 MAGEB2O15479 319 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 LYPLA2O95372 231 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 LCA5LO95447 670 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 EDNRBP24530 442 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 CHRNA3P32297 505 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 PRKCZQ05513 592 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 SEPT6Q14141 434 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 ARHGAP44Q17R89 818 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 IZUMO2Q6UXV1 221 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 ARMCX6Q7L4S7 300 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 SESTD1Q86VW0 696 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 RASSF3Q86WH2 238 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 ECHDC2Q86YB7 292 aa11.45□□□□□ -0.58
LSM3-201ENST00000306024 CKAP2Q8WWK9 683 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms