RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ZNF618Q5T7W0 954 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 EIF3MQ7L2H7 374 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ZBTB8OSQ8IWT0 167 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 RHOT1Q8IXI2 618 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 EID3Q8N140 333 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 RNFT2Q96EX2 444 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CHMP1AQ9HD42 196 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PRDM5Q9NQX1 630 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SMYD2Q9NRG4 433 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PANK4Q9NVE7 773 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ARPP21Q9UBL0 812 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SLC24A2Q9UI40 661 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PSMD12O00232 456 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 MYL6P60660 151 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ARMCX2Q7L311 632 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SRFBP1Q8NEF9 429 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 POF1BQ8WVV4 589 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 TMEM237Q96Q45 408 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 ZCWPW1Q9H0M4 648 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CPSF3Q9UKF6 684 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 POLIQ9UNA4 740 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 MYO3BQ8WXR4 1341 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SNX4O95219 450 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CCNE2O96020 404 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 GRK3P35626 688 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CEBPGP53567 150 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 GALNT18Q6P9A2 607 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PLET1Q6UQ28 207 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CCNI2Q6ZMN8 369 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 SMYD4Q8IYR2 804 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 L3MBTL3Q96JM7 780 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PAIP1Q9H074 479 aaKnown RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 GPN1Q9HCN4 374 aaPredicted RBP5.03□□□□□ -1.6
CSMD3-201ENST00000297405 STAP2Q9UGK3 403 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 CROTQ9UKG9 612 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 PCDHA7Q9UN72 937 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 MFHAS1Q9Y4C4 1052 aa5.03□□□□□ -1.6
CSMD3-201ENST00000297405 C1orf232A0A0U1RR37 186 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ATP9AO75110 1047 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 MYL6BP14649 208 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ATP6V1B1P15313 513 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TMOD1P28289 359 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 AP3M2P53677 418 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 MAPK6Q16659 721 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TTBK2Q6IQ55 1244 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ADHFE1Q8IWW8 467 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 RNF217Q8TC41 542 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 FAM162AQ96A26 154 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CEP170P1Q96L14 293 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 AP1S3Q96PC3 154 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SMURF2Q9HAU4 748 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 KCND2Q9NZV8 630 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 PYCARDQ9ULZ3 195 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 LOC110117498-PIK3R3F6TDL0 507 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 GTF2IP78347 998 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 PNOCQ13519 176 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 DPYSQ14117 519 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 LINC00523Q86TU6 105 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CCDC28AQ8IWP9 274 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 PIK3R3Q92569 461 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TEKT5Q96M29 485 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 S100A13Q99584 98 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 DHX36Q9H2U1 1008 aaKnown RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 NDST4Q9H3R1 872 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 RGS18Q9NS28 235 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 DCAF8L1A6NGE4 600 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 UBXN8O00124 270 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CLTBP09497 229 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ERCC2P18074 760 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SCN1BQ07699 218 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TTC23Q5W5X9 447 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SAMD1Q6SPF0 538 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 FSD1LQ9BXM9 530 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 MGAT4AQ9UM21 535 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CORO2BQ9UQ03 480 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SLC4A4Q9Y6R1 1079 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 LAMC3Q9Y6N6 1575 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 PHGDHO43175 533 aaKnown RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 HOXB8P17481 243 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SPIRE1Q08AE8 756 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 MIS18BP1Q6P0N0 1132 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 AKAP1Q92667 903 aaKnown RBP eCLIP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ALDH8A1Q9H2A2 487 aaPredicted RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 RIBC2Q9H4K1 309 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 C5orf58C9J3I9 102 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 ZNF197O14709 1029 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TIMM44O43615 452 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 DNAJB5O75953 348 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 POU1F1P28069 291 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 GPD2P43304 727 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 SCARA3Q6AZY7 606 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 DARS2Q6PI48 645 aaKnown RBP5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CYP2U1Q7Z449 544 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 MYLPFQ96A32 169 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 S100PBPQ96BU1 408 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 EPB41L4BQ9H329 900 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 MAN1B1Q9UKM7 699 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 TET3O43151 1660 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 BMP10O95393 424 aa5.02□□□□□ -1.61
CSMD3-201ENST00000297405 CRKP46108 304 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms