RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PCDHGC3Q9UN70 934 aa17.46■□□□□ 0.39
USP4-201ENST00000265560 PI4K2BG5E9Z4 385 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 CD4P01730 458 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 GPD2P43304 727 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 XKR4Q5GH76 650 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 TMCO3Q6UWJ1 677 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 OSTM1Q86WC4 334 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 TTC30AQ86WT1 665 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 APPL2Q8NEU8 664 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 PDCD11Q14690 1871 aaKnown RBP17.45■□□□□ 0.38
USP4-201ENST00000265560 MOXD2PA6NHM9 499 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 CLDN5O00501 218 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 CYB561D2O14569 222 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 MED7O43513 233 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 VDRP11473 427 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 RAB6CQ53S08 254 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 PMF1Q6P1K2 205 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 CC2D1AQ6P1N0 951 aaPredicted RBP17.45■□□□□ 0.38
USP4-201ENST00000265560 SCUBE3Q8IX30 993 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 UBL4BQ8N7F7 174 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 C18orf8Q96DM3 657 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 HERPUD2Q9BSE4 406 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 MIS12Q9H081 205 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 RAB6CQ9H0N0 254 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 CDH23Q9H251 3354 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 KBTBD13C9JR72 458 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 E5RJQ4 531 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 RAD51CO43502 376 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 MYBL1P10243 752 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 PDCLQ13371 301 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 LRRC52Q8N7C0 313 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 IFT81Q8WYA0 676 aa17.45■□□□□ 0.38
USP4-201ENST00000265560 METTL5Q9NRN9 209 aaKnown RBP17.45■□□□□ 0.38
USP4-201ENST00000265560 ARGLU1Q9NWB6 273 aaPredicted RBP17.45■□□□□ 0.38
USP4-201ENST00000265560 RALGAPA2Q2PPJ7 1873 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 HUS1O60921 280 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 PFKMP08237 780 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 CNGA2Q16280 664 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 MMGT1Q8N4V1 131 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 ACTRT1Q8TDG2 376 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 RPGRIP1Q96KN7 1286 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 TRIM31Q9BZY9 425 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 SNX25Q9H3E2 840 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 MRPL47Q9HD33 250 aaKnown RBP17.44■□□□□ 0.38
USP4-201ENST00000265560 CABYRO75952 493 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 LSM8O95777 96 aaKnown RBP17.44■□□□□ 0.38
USP4-201ENST00000265560 ITGB1P05556 798 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 GUCY2DQ02846 1103 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 SH3PXD2AQ5TCZ1 1133 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 DDX42Q86XP3 938 aaKnown RBP eCLIP17.44■□□□□ 0.38
USP4-201ENST00000265560 CCDC50Q8IVM0 306 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 ADGRF2Q8IZF7 708 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 RNF25Q96BH1 459 aaPredicted RBP17.44■□□□□ 0.38
USP4-201ENST00000265560 TRIM11Q96F44 468 aa17.44■□□□□ 0.38
USP4-201ENST00000265560 SART1O43290 800 aaKnown RBP17.43■□□□□ 0.38
USP4-201ENST00000265560 PROSCO94903 275 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 GNRH1P01148 92 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 BRCC3P46736 316 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 TCEAL1Q15170 157 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 SMTNL2Q2TAL5 461 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 OR6B2Q6IFH4 312 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 ANKS1BQ7Z6G8 1248 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 SLC2A14Q8TDB8 520 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 NDRG1Q92597 394 aaKnown RBP17.43■□□□□ 0.38
USP4-201ENST00000265560 RSAD1Q9HA92 442 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 PCDHA3Q9Y5H8 950 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 A0A0U1RQF3 1178 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 TMEM191CA6NGB0 347 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 ARVCFO00192 962 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 XPOTO43592 962 aaKnown RBP17.43■□□□□ 0.38
USP4-201ENST00000265560 SASH3O75995 380 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 B3GAT3O94766 335 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 HEXIM1O94992 359 aaKnown RBP17.43■□□□□ 0.38
USP4-201ENST00000265560 CALB1P05937 261 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 KRT3P12035 628 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 CTNNA1P35221 906 aaKnown RBP17.43■□□□□ 0.38
USP4-201ENST00000265560 PDE4CQ08493 712 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 KCNT1Q5JUK3 1230 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 TRAF7Q6Q0C0 670 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 XYLT1Q86Y38 959 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 CARD9Q9H257 536 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 EPB41L5Q9HCM4 733 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 CHST12Q9NRB3 414 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 PODXLO00592 558 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 B4GALT3O60512 393 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 ZNF572Q7Z3I7 529 aaPredicted RBP17.43■□□□□ 0.38
USP4-201ENST00000265560 RPAINQ86UA6 219 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 CLEC4CQ8WTT0 213 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 SCLYQ96I15 445 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 VCPIP1Q96JH7 1222 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 SENP8Q96LD8 212 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 WNT8AQ9H1J5 351 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 ARFGAP3Q9NP61 516 aa17.43■□□□□ 0.38
USP4-201ENST00000265560 GABBR2O75899 941 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 STAU1O95793 577 aaKnown RBP17.42■□□□□ 0.38
USP4-201ENST00000265560 TKTP29401 623 aaKnown RBP17.42■□□□□ 0.38
USP4-201ENST00000265560 KCNJ1P48048 391 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 CDO1Q16878 200 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 FAM182AQ5T1J6 154 aa17.42■□□□□ 0.38
USP4-201ENST00000265560 FAM102AQ5T9C2 384 aaPredicted RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms