RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RABGAP1LQ5R372 815 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 CLMNQ96JQ2 1002 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 RMDN2Q96LZ7 410 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 SRP72O76094 671 aaKnown RBP19.95■□□□□ 0.78
UPF1-201ENST00000262803 GMPSP49915 693 aaPredicted RBP19.95■□□□□ 0.78
UPF1-201ENST00000262803 KDSRQ06136 332 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 CUL3Q13618 768 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 GJB7Q6PEY0 223 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 ARRDC4Q8NCT1 418 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 SHCBP1Q8NEM2 672 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 PNKPQ96T60 521 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 DNAJC7Q99615 494 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 H0Y626 953 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 TRIM16O95361 564 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 RGS7P49802 495 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 KPNA1P52294 538 aaPredicted RBP19.95■□□□□ 0.78
UPF1-201ENST00000262803 STX3Q13277 289 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 CENPPQ6IPU0 288 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 FAM118BQ9BPY3 351 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 LATS2Q9NRM7 1088 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 CAMSAP1Q5T5Y3 1602 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 SLC37A4O43826 429 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 ICAM1P05362 532 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 SUPT20HL2P0C7V6 817 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 CYP2B6P20813 491 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 NPHS2Q9NP85 383 aa19.95■□□□□ 0.78
UPF1-201ENST00000262803 ZMYM2Q9UBW7 1377 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 APOA1P02647 267 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 TOB1P50616 345 aaPredicted RBP19.94■□□□□ 0.78
UPF1-201ENST00000262803 HUNKP57058 714 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 RPL10AP62906 217 aaKnown RBP19.94■□□□□ 0.78
UPF1-201ENST00000262803 FOXD4Q12950 439 aaPredicted RBP19.94■□□□□ 0.78
UPF1-201ENST00000262803 TIGD7Q6NT04 549 aaPredicted RBP19.94■□□□□ 0.78
UPF1-201ENST00000262803 CHSY1Q86X52 802 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 ELAVL2Q12926 359 aaKnown RBP19.94■□□□□ 0.78
UPF1-201ENST00000262803 GRB10Q13322 594 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 ITPK1Q13572 414 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 XPO7Q9UIA9 1087 aaKnown RBP19.94■□□□□ 0.78
UPF1-201ENST00000262803 TMEM120BA0PK00 339 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 ZSCAN9O15535 394 aaPredicted RBP19.94■□□□□ 0.78
UPF1-201ENST00000262803 FBXO21O94952 628 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 NCKAP1LP55160 1127 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 A0A087X0T9 212 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 DCDC2CA8MYV0 355 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 CTSHP09668 335 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 FAM228BP0C875 321 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 VCLP18206 1134 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 ALDH18A1P54886 795 aaKnown RBP19.94■□□□□ 0.78
UPF1-201ENST00000262803 PABPC5Q96DU9 382 aaKnown RBP19.94■□□□□ 0.78
UPF1-201ENST00000262803 FAR2Q96K12 515 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 UNC45AQ9H3U1 944 aa19.94■□□□□ 0.78
UPF1-201ENST00000262803 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.94■□□□□ 0.78
UPF1-201ENST00000262803 SOAT2O75908 522 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 ALDH7A1P49419 539 aaKnown RBP19.93■□□□□ 0.78
UPF1-201ENST00000262803 TTC39BQ5VTQ0 682 aaPredicted RBP19.93■□□□□ 0.78
UPF1-201ENST00000262803 CYFIP2Q96F07 1278 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 CARD9Q9H257 536 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 NAGPAQ9UK23 515 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 CDY2AQ9Y6F7 541 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 CDY1Q9Y6F8 540 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 HEATR9A2RTY3 570 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 MAGEA4P43358 317 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 OR1G1P47890 313 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 GOLGA7BQ2TAP0 167 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 ADCK2Q7Z695 626 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 SNX31Q8N9S9 440 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 CINPQ9BW66 212 aaPredicted RBP19.93■□□□□ 0.78
UPF1-201ENST00000262803 KRCC1Q9NPI7 259 aaPredicted RBP19.93■□□□□ 0.78
UPF1-201ENST00000262803 GRID1Q9ULK0 1009 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 CDYLQ9Y232 598 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 ALDH1A2O94788 518 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 GSNP06396 782 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 ENO1P06733 434 aaKnown RBP19.93■□□□□ 0.78
UPF1-201ENST00000262803 SNRPAP09012 282 aaKnown RBP19.93■□□□□ 0.78
UPF1-201ENST00000262803 C16orf87Q6PH81 154 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 TMEM169Q96HH4 297 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 GPR63Q9BZJ6 419 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 CD274Q9NZQ7 290 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 CYP11B2P19099 503 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 ITGA8P53708 1063 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 KBTBD12Q3ZCT8 623 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 TPCN2Q8NHX9 752 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 IL17RAQ96F46 866 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 AGAP3Q96P47 875 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 CCDC90BQ9GZT6 254 aa19.93■□□□□ 0.78
UPF1-201ENST00000262803 SLC29A2Q14542 456 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 CCDC126Q96EE4 140 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 HPDLQ96IR7 371 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 STIP1P31948 543 aaKnown RBP19.92■□□□□ 0.78
UPF1-201ENST00000262803 POLD3Q15054 466 aaPredicted RBP19.92■□□□□ 0.78
UPF1-201ENST00000262803 EPC2Q52LR7 807 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 TRPM8Q7Z2W7 1104 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 TRIM69Q86WT6 500 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 AGGF1Q8N302 714 aaeCLIP19.92■□□□□ 0.78
UPF1-201ENST00000262803 ZNF518BQ9C0D4 1074 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 CHORDC1Q9UHD1 332 aaPredicted RBP19.92■□□□□ 0.78
UPF1-201ENST00000262803 CHMP2BQ9UQN3 213 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 TRPC5OSA6NMA1 111 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 PSTPIP1O43586 416 aa19.92■□□□□ 0.78
UPF1-201ENST00000262803 HLA-DPA1P20036 260 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 105.3 ms