RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.65□□□□□ -1.03
PTPN3-201ENST00000262539 CCDC157Q569K6 752 aa8.65□□□□□ -1.03
PTPN3-201ENST00000262539 NFRKBQ6P4R8 1299 aa8.65□□□□□ -1.03
PTPN3-201ENST00000262539 CENPUQ71F23 418 aa8.65□□□□□ -1.03
PTPN3-201ENST00000262539 PGBD3Q8N328 593 aa8.65□□□□□ -1.03
PTPN3-201ENST00000262539 ARHGAP18Q8N392 663 aa8.65□□□□□ -1.03
PTPN3-201ENST00000262539 PPFIBP2Q8ND30 876 aa8.65□□□□□ -1.03
PTPN3-201ENST00000262539 HPDLQ96IR7 371 aa8.65□□□□□ -1.03
PTPN3-201ENST00000262539 MRGBPQ9NV56 204 aa8.65□□□□□ -1.03
PTPN3-201ENST00000262539 PCYOX1Q9UHG3 505 aa8.65□□□□□ -1.03
PTPN3-201ENST00000262539 GRIN2DO15399 1336 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 BAZ2BQ9UIF8 2168 aaKnown RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 EPHB6O15197 1021 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 CDH16O75309 829 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 RARGP13631 454 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 ARL4CP56559 192 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 NLRP11P59045 1033 aaKnown RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 VSNL1P62760 191 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 TSPY1Q01534 308 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 FOXD4Q12950 439 aaPredicted RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 TWF2Q6IBS0 349 aaKnown RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 ARHGEF2Q92974 986 aaKnown RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 LRRC39Q96DD0 335 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 KIF12Q96FN5 646 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 FAM49AQ9H0Q0 323 aaPredicted RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 EFCC1Q9HA90 598 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 CISHQ9NSE2 258 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 WHRNQ9P202 907 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 BTBD19C9JJ37 291 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 COBLO75128 1261 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 MMP8P22894 467 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 ADCY8P40145 1251 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 OSTNP61366 133 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 DHX9Q08211 1270 aaKnown RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 KLHL38Q2WGJ6 581 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 MAP1SQ66K74 1059 aaPredicted RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 FBXO16Q8IX29 292 aaPredicted RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 TOP6BLQ8N6T0 577 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 SRPK1Q96SB4 655 aaKnown RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 YIPF2Q9BWQ6 316 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 LRRC19Q9H756 370 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 TRPV2Q9Y5S1 764 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 SLC2A3P11169 496 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 GARSP41250 739 aaKnown RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 ACOT2P49753 483 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 BFSP2Q13515 415 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 PHLDB3Q6NSJ2 640 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 TADA2BQ86TJ2 420 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 TLK2Q86UE8 772 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 XAB2Q9HCS7 855 aaKnown RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 HACD3Q9P035 362 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 NOCTQ9UK39 431 aaKnown RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 ANKRD63C9JTQ0 380 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 H7C0C1 242 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 PSMD3O43242 534 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 COMTP21964 271 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 ATP5OP48047 213 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 NOMO3P69849 1222 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 PRAMEF18Q5VWM3 479 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 OR6B2Q6IFH4 312 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 JAMLQ86YT9 394 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 GBP7Q8N8V2 638 aaPredicted RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 BRI3BPQ8WY22 251 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 PGM2Q96G03 612 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 SLC9A7Q96T83 725 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 SLC4A7Q9Y6M7 1214 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 PSMA2P25787 234 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 RECQLP46063 649 aaPredicted RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 CDK16Q00536 496 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 ARHGAP17Q68EM7 881 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 CDKL2Q92772 493 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 FAM149B1Q96BN6 582 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 SNF8Q96H20 258 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 PDGFDQ9GZP0 370 aaPredicted RBP8.64□□□□□ -1.03
PTPN3-201ENST00000262539 VCXQ9H320 206 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 VCX3BQ9H321 246 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 GIT1Q9Y2X7 761 aa8.64□□□□□ -1.03
PTPN3-201ENST00000262539 A0A1B0GUA9 196 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 F8W8V4 182 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 IFNB1P01574 187 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 PTPN7P35236 360 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 INPP1P49441 399 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 ARHGAP1Q07960 439 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 FBXO47Q5MNV8 452 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 GLB1LQ6UWU2 654 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 CAPN12Q6ZSI9 719 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 ARCQ7LC44 396 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 NDUFAF2Q8N183 169 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 LRRC43Q8N309 656 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 APPL2Q8NEU8 664 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 MAML3Q96JK9 1138 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 HEXIM2Q96MH2 286 aaKnown RBP8.63□□□□□ -1.03
PTPN3-201ENST00000262539 HAUS8Q9BT25 410 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 FTHL17Q9BXU8 183 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 CDH5P33151 784 aaPredicted RBP8.63□□□□□ -1.03
PTPN3-201ENST00000262539 CLCN3P51790 818 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 MNAT1P51948 309 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 ATP11AP98196 1134 aa8.63□□□□□ -1.03
PTPN3-201ENST00000262539 NFX1Q12986 1120 aaKnown RBP8.63□□□□□ -1.03
PTPN3-201ENST00000262539 LAMB3Q13751 1172 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms