RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 OTUD4Q01804 1114 aaKnown RBP11.27□□□□□ -0.61
USP28-201ENST00000003302 STYK1Q6J9G0 422 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 ZC3H18Q86VM9 953 aaKnown RBP11.27□□□□□ -0.61
USP28-201ENST00000003302 FEZF2Q8TBJ5 459 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 TMC2Q8TDI7 906 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 MZB1Q8WU39 189 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 TMEM174Q8WUU8 243 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 RUNDC3BQ96NL0 473 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 MINDY3Q9H8M7 445 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 LGALS13Q9UHV8 139 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 RABGEF1Q9UJ41 708 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 hCG_1818297A0A087WSY0 165 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 LRCH4O75427 683 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 MUTP22033 750 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 GBP2P32456 591 aaPredicted RBP11.27□□□□□ -0.61
USP28-201ENST00000003302 SPOCD1Q6ZMY3 1216 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 RHPN2Q8IUC4 686 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 ALLCQ8N6M5 410 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 TCP10LQ8TDR4 215 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 MAGEB18Q96M61 343 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 MSTO1Q9BUK6 570 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 CHMP2BQ9UQN3 213 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 MYO15AQ9UKN7 3530 aa11.27□□□□□ -0.61
USP28-201ENST00000003302 POLR2AP24928 1970 aaKnown RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 ADGRA2Q96PE1 1338 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 PMM2O15305 246 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 CLDN10P78369 228 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 SPARCL1Q14515 664 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 KHDC1Q4VXA5 237 aaKnown RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 GJC2Q5T442 439 aaPredicted RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 FAM219BQ5XKK7 198 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 KATNAL2Q8IYT4 538 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 FAM71DQ8N9W8 422 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 IL1RAPL1Q9NZN1 696 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 CXorf49A8MYA2 514 aaPredicted RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 SORBS2O94875 1100 aaKnown RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 TFE3P19532 575 aaPredicted RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 CTCFP49711 727 aaPredicted RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 POLGP54098 1239 aaPredicted RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 THNSL1Q8IYQ7 743 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 TAOK3Q9H2K8 898 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 ATP6V0A4Q9HBG4 840 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 CISHQ9NSE2 258 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 GPATCH2LQ9NWQ4 482 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 EXTL3O43909 919 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 CST8O60676 142 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 ARIH2O95376 493 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 CCNHP51946 323 aaPredicted RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 PSMD6Q15008 389 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 C15orf59Q2T9L4 293 aaPredicted RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 FBF1Q8TES7 1133 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 WDR60Q8WVS4 1066 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 KIFAP3Q92845 792 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 MOCOSQ96EN8 888 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 AVENQ9NQS1 362 aaPredicted RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 CYP39A1Q9NYL5 469 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 GSTA1P08263 222 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 CCNB1P14635 433 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 PEX19P40855 299 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 EEF1DP3Q658K8 133 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 NRG4Q8WWG1 115 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 ZBED3Q96IU2 234 aaPredicted RBP11.26□□□□□ -0.61
USP28-201ENST00000003302 ARL8BQ9NVJ2 186 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 SLC9A2Q9UBY0 812 aa11.26□□□□□ -0.61
USP28-201ENST00000003302 A0A0B4J269 797 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 EDF1O60869 148 aaKnown RBP11.25□□□□□ -0.61
USP28-201ENST00000003302 PDHA1P08559 390 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 RPL22P35268 128 aaKnown RBP11.25□□□□□ -0.61
USP28-201ENST00000003302 GRIA1P42261 906 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 PGGT1BP53609 377 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 ATXN1P54253 815 aaKnown RBP11.25□□□□□ -0.61
USP28-201ENST00000003302 LY6KQ17RY6 165 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 PPP1R15BQ5SWA1 713 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 FBXO36Q8NEA4 188 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 CLPTM1LQ96KA5 538 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 PIDD1Q9HB75 910 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 A0A0G2JND7 137 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 K7ERI5 159 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 WDR46O15213 610 aaKnown RBP11.25□□□□□ -0.61
USP28-201ENST00000003302 EZRP15311 586 aaKnown RBP11.25□□□□□ -0.61
USP28-201ENST00000003302 NR1H3Q13133 447 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 C3orf62Q6ZUJ4 267 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 ZNF75CPQ92670 426 aaPredicted RBP11.25□□□□□ -0.61
USP28-201ENST00000003302 KCNK13Q9HB14 408 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 ACSS2Q9NR19 701 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 ANKEF1Q9NU02 776 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 MARCOQ9UEW3 520 aaPredicted RBP11.25□□□□□ -0.61
USP28-201ENST00000003302 MAPK13O15264 365 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 MCCD1P59942 119 aaPredicted RBP11.25□□□□□ -0.61
USP28-201ENST00000003302 SLC25A11Q02978 314 aaKnown RBP11.25□□□□□ -0.61
USP28-201ENST00000003302 HSDL1Q3SXM5 330 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 BBS9Q3SYG4 887 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 UCMAQ8WVF2 138 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 CYLDQ9NQC7 956 aa11.25□□□□□ -0.61
USP28-201ENST00000003302 FARP1Q9Y4F1 1045 aaPredicted RBP11.25□□□□□ -0.61
USP28-201ENST00000003302 PAPPA2Q9BXP8 1791 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 PLA2G6O60733 806 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 TFAMQ00059 246 aaKnown RBP11.24□□□□□ -0.61
USP28-201ENST00000003302 KRT76Q01546 638 aa11.24□□□□□ -0.61
USP28-201ENST00000003302 ALYREFQ86V81 257 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms