RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C RPS16BP0CX52 143 aaKnown RBP1.76□□□□□ -2.13
UFD4YKL010C SUA7P29055 345 aaPredicted RBP1.76□□□□□ -2.13
UFD4YKL010C NSA2P40078 261 aaKnown RBP1.76□□□□□ -2.13
UFD4YKL010C YFL051CP43552 160 aa1.76□□□□□ -2.13
UFD4YKL010C YJL027CP47063 138 aaPredicted RBP1.76□□□□□ -2.13
UFD4YKL010C YGR149WP48236 432 aa1.76□□□□□ -2.13
UFD4YKL010C GEP7P53171 287 aa1.76□□□□□ -2.13
UFD4YKL010C SSU72P53538 206 aaPredicted RBP1.76□□□□□ -2.13
UFD4YKL010C DUG3P53871 357 aa1.76□□□□□ -2.13
UFD4YKL010C GDH1P07262 454 aaKnown RBP1.75□□□□□ -2.13
UFD4YKL010C RPS25BP0C0T4 108 aaKnown RBP1.75□□□□□ -2.13
UFD4YKL010C YLL053CP0CD98 152 aa1.75□□□□□ -2.13
UFD4YKL010C RPS23AP0CX29 145 aaKnown RBP1.75□□□□□ -2.13
UFD4YKL010C RPS23BP0CX30 145 aa1.75□□□□□ -2.13
UFD4YKL010C CDC39P25655 2108 aaKnown RBP1.75□□□□□ -2.13
UFD4YKL010C FIG1P38224 298 aa1.75□□□□□ -2.13
UFD4YKL010C YGP1P38616 354 aaKnown RBP1.75□□□□□ -2.13
UFD4YKL010C TEM1P38987 245 aa1.75□□□□□ -2.13
UFD4YKL010C MGR2Q02889 113 aa1.75□□□□□ -2.13
UFD4YKL010C TVP18Q04767 167 aa1.75□□□□□ -2.13
UFD4YKL010C FIT2Q08906 153 aa1.75□□□□□ -2.13
UFD4YKL010C RPS25AQ3E792 108 aaPredicted RBP1.75□□□□□ -2.13
UFD4YKL010C YCR024C-BQ3E7Z8 88 aa1.75□□□□□ -2.13
UFD4YKL010C RAD23P32628 398 aaKnown RBP1.75□□□□□ -2.13
UFD4YKL010C SSS1P35179 80 aa1.75□□□□□ -2.13
UFD4YKL010C RPL14AP36105 138 aaKnown RBP1.75□□□□□ -2.13
UFD4YKL010C YKR045CP36138 183 aa1.75□□□□□ -2.13
UFD4YKL010C MOH1P38191 138 aa1.75□□□□□ -2.13
UFD4YKL010C YBR220CP38318 560 aa1.75□□□□□ -2.13
UFD4YKL010C RPL14BP38754 138 aaKnown RBP1.75□□□□□ -2.13
UFD4YKL010C IRC22P40006 225 aa1.75□□□□□ -2.13
UFD4YKL010C YGR151CP53287 111 aa1.75□□□□□ -2.13
UFD4YKL010C YMR007WQ03675 126 aa1.75□□□□□ -2.13
UFD4YKL010C RIM9Q04734 239 aa1.75□□□□□ -2.13
UFD4YKL010C SNA4Q07549 140 aa1.75□□□□□ -2.13
UFD4YKL010C ERP4Q12450 207 aa1.75□□□□□ -2.13
UFD4YKL010C YMR105W-AQ8TGS8 64 aa1.75□□□□□ -2.13
UFD4YKL010C HTB1P02293 131 aaKnown RBP1.75□□□□□ -2.13
UFD4YKL010C HTB2P02294 131 aa1.75□□□□□ -2.13
UFD4YKL010C YHR213WP0CI67 198 aa1.75□□□□□ -2.13
UFD4YKL010C HSK3P69852 69 aa1.75□□□□□ -2.13
UFD4YKL010C SHH3Q04487 196 aa1.75□□□□□ -2.13
UFD4YKL010C LOA1Q06508 300 aa1.75□□□□□ -2.13
UFD4YKL010C YKL023C-AQ2V2P3 75 aa1.75□□□□□ -2.13
UFD4YKL010C COX2P00410 251 aa1.74□□□□□ -2.13
UFD4YKL010C RIB5P38145 238 aa1.74□□□□□ -2.13
UFD4YKL010C YEL057CP39983 233 aa1.74□□□□□ -2.13
UFD4YKL010C RPA43P46669 326 aa1.74□□□□□ -2.13
UFD4YKL010C MIC27P50945 234 aa1.74□□□□□ -2.13
UFD4YKL010C ADH6Q04894 360 aaKnown RBP1.74□□□□□ -2.13
UFD4YKL010C LIP2Q06005 328 aa1.74□□□□□ -2.13
UFD4YKL010C RAF1Q06891 181 aa1.74□□□□□ -2.13
UFD4YKL010C YDL157CQ12082 118 aa1.74□□□□□ -2.13
UFD4YKL010C POC4Q12245 148 aaPredicted RBP1.74□□□□□ -2.13
UFD4YKL010C RPL9AP05738 191 aaKnown RBP1.74□□□□□ -2.13
UFD4YKL010C RPL12AP0CX53 165 aaKnown RBP1.74□□□□□ -2.13
UFD4YKL010C RPL12BP0CX54 165 aa1.74□□□□□ -2.13
UFD4YKL010C MSI1P13712 422 aa1.74□□□□□ -2.13
UFD4YKL010C YNL194CP40169 301 aa1.74□□□□□ -2.13
UFD4YKL010C COX18P53239 316 aa1.74□□□□□ -2.13
UFD4YKL010C YLR342W-AQ3E810 57 aa1.74□□□□□ -2.13
UFD4YKL010C DFR1P07807 211 aaKnown RBP RIP-Chip data1.74□□□□□ -2.13not detected
UFD4YKL010C UTR5P32630 166 aa1.74□□□□□ -2.13
UFD4YKL010C YKL075CP36083 450 aa1.74□□□□□ -2.13
UFD4YKL010C ADH5P38113 351 aaKnown RBP1.74□□□□□ -2.13
UFD4YKL010C GPI18P38211 433 aa1.74□□□□□ -2.13
UFD4YKL010C YER188WP40103 239 aa1.74□□□□□ -2.13
UFD4YKL010C YIL012WP40551 113 aa1.74□□□□□ -2.13
UFD4YKL010C YJL028WP47062 111 aa1.74□□□□□ -2.13
UFD4YKL010C YDR042CQ03205 200 aa1.74□□□□□ -2.13
UFD4YKL010C POS5Q06892 414 aa1.74□□□□□ -2.13
UFD4YKL010C YFH1Q07540 174 aa1.74□□□□□ -2.13
UFD4YKL010C FMP27Q06179 2628 aa1.74□□□□□ -2.13
UFD4YKL010C YPR170W-BP0C5R9 85 aa1.74□□□□□ -2.13
UFD4YKL010C HMX1P32339 317 aa1.74□□□□□ -2.13
UFD4YKL010C RPS0AP32905 252 aaKnown RBP1.74□□□□□ -2.13
UFD4YKL010C MIC12P38341 106 aa1.74□□□□□ -2.13
UFD4YKL010C YFL015CP43578 164 aa1.74□□□□□ -2.13
UFD4YKL010C UBC13P52490 153 aa1.74□□□□□ -2.13
UFD4YKL010C GIM5Q04493 163 aa1.74□□□□□ -2.13
UFD4YKL010C TRI1Q05024 226 aa1.74□□□□□ -2.13
UFD4YKL010C CNL1Q06333 122 aa1.74□□□□□ -2.13
UFD4YKL010C RXT3Q07458 294 aa1.74□□□□□ -2.13
UFD4YKL010C YLR050CQ12155 161 aaKnown RBP1.74□□□□□ -2.13
UFD4YKL010C YPT53P36019 220 aa1.73□□□□□ -2.13
UFD4YKL010C YBL071CP38185 102 aa1.73□□□□□ -2.13
UFD4YKL010C HIT1P46973 164 aa1.73□□□□□ -2.13
UFD4YKL010C BNA1P47096 177 aa1.73□□□□□ -2.13
UFD4YKL010C DSK2P48510 373 aa1.73□□□□□ -2.13
UFD4YKL010C YGL230CP53074 147 aa1.73□□□□□ -2.13
UFD4YKL010C YNR071CP53757 342 aa1.73□□□□□ -2.13
UFD4YKL010C RPL21AQ02753 160 aaKnown RBP1.73□□□□□ -2.13
UFD4YKL010C MIX14Q04341 121 aa1.73□□□□□ -2.13
UFD4YKL010C RPL21BQ12672 160 aaKnown RBP1.73□□□□□ -2.13
UFD4YKL010C ADH2P00331 348 aaKnown RBP1.73□□□□□ -2.13
UFD4YKL010C MRPL31P14063 131 aaPredicted RBP1.73□□□□□ -2.13
UFD4YKL010C FCY2P17064 533 aa1.73□□□□□ -2.13
UFD4YKL010C LCB3P47013 409 aa1.73□□□□□ -2.13
UFD4YKL010C YLR296WQ05898 108 aa1.73□□□□□ -2.13
UFD4YKL010C YFL068WP0CX99 160 aa1.73□□□□□ -2.13
Retrieved 100 of 5,963 RNA–protein pairs in 113.1 ms