RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W FIT2Q08906 153 aa1.78□□□□□ -2.12
UPF3YGR072W YPR202WQ08993 238 aa1.78□□□□□ -2.12
UPF3YGR072W ATG41Q12048 136 aa1.78□□□□□ -2.12
UPF3YGR072W YOR381W-AQ3E804 55 aa1.78□□□□□ -2.12
UPF3YGR072W PET54P10834 293 aa1.77□□□□□ -2.13
UPF3YGR072W MAK31P23059 88 aa1.77□□□□□ -2.13
UPF3YGR072W MOB1P40484 314 aa1.77□□□□□ -2.13
UPF3YGR072W HYR1P40581 163 aaKnown RBP1.77□□□□□ -2.13
UPF3YGR072W MOG1P47123 218 aa1.77□□□□□ -2.13
UPF3YGR072W PAC10P48363 199 aa1.77□□□□□ -2.13
UPF3YGR072W ORM1P53224 222 aa1.77□□□□□ -2.13
UPF3YGR072W LIP1Q03579 150 aa1.77□□□□□ -2.13
UPF3YGR072W YML079WQ03629 201 aa1.77□□□□□ -2.13
UPF3YGR072W PKR1Q03880 122 aaKnown RBP1.77□□□□□ -2.13
UPF3YGR072W RAV2Q03956 351 aa1.77□□□□□ -2.13
UPF3YGR072W YHP1Q04116 353 aa1.77□□□□□ -2.13
UPF3YGR072W RIM9Q04734 239 aa1.77□□□□□ -2.13
UPF3YGR072W YMR030W-AQ3E760 96 aa1.77□□□□□ -2.13
UPF3YGR072W YNL146C-AQ3E7Z1 64 aa1.77□□□□□ -2.13
UPF3YGR072W STF2P16965 84 aa1.76□□□□□ -2.13
UPF3YGR072W RPB7P34087 171 aa1.76□□□□□ -2.13
UPF3YGR072W HTD2P38790 280 aaKnown RBP1.76□□□□□ -2.13
UPF3YGR072W SOK1P40317 901 aa1.76□□□□□ -2.13
UPF3YGR072W NSE4P43124 402 aa1.76□□□□□ -2.13
UPF3YGR072W YAE1P47118 141 aaPredicted RBP1.76□□□□□ -2.13
UPF3YGR072W UPS1Q05776 175 aa1.76□□□□□ -2.13
UPF3YGR072W UIP4Q08926 304 aa1.76□□□□□ -2.13
UPF3YGR072W YAP3P38749 330 aa1.75□□□□□ -2.13
UPF3YGR072W YGL193CP53097 103 aa1.75□□□□□ -2.13
UPF3YGR072W MET31Q03081 177 aa1.75□□□□□ -2.13
UPF3YGR072W YHL042WP38729 150 aa1.74□□□□□ -2.13
UPF3YGR072W CCS1P40202 249 aaKnown RBP1.74□□□□□ -2.13
UPF3YGR072W LSM1P47017 172 aaKnown RBP1.74□□□□□ -2.13
UPF3YGR072W ATG10Q07879 167 aa1.74□□□□□ -2.13
UPF3YGR072W YBL010CP32788 280 aa1.73□□□□□ -2.13
UPF3YGR072W FIP1P45976 327 aa1.73□□□□□ -2.13
UPF3YGR072W CCC1P47818 322 aa1.73□□□□□ -2.13
UPF3YGR072W YNR064CP53750 290 aa1.73□□□□□ -2.13
UPF3YGR072W SPS2P08459 502 aa1.72□□□□□ -2.13
UPF3YGR072W YER181CP40097 107 aa1.72□□□□□ -2.13
UPF3YGR072W MPM1P40364 252 aa1.72□□□□□ -2.13
UPF3YGR072W YJR015WP47090 510 aa1.72□□□□□ -2.13
UPF3YGR072W UBC7Q02159 165 aa1.72□□□□□ -2.13
UPF3YGR072W YDR102CQ03864 110 aa1.72□□□□□ -2.13
UPF3YGR072W YDL157CQ12082 118 aa1.72□□□□□ -2.13
UPF3YGR072W PST2Q12335 198 aaKnown RBP1.72□□□□□ -2.13
UPF3YGR072W SEN2P16658 377 aa1.71□□□□□ -2.14
UPF3YGR072W YPT31P38555 223 aaKnown RBP1.71□□□□□ -2.14
UPF3YGR072W IPI1P38803 334 aaPredicted RBP1.71□□□□□ -2.14
UPF3YGR072W YGR269WP40326 108 aa1.71□□□□□ -2.14
UPF3YGR072W RRT7Q07829 113 aa1.71□□□□□ -2.14
UPF3YGR072W YEL067CP39978 195 aa1.7□□□□□ -2.14
UPF3YGR072W YDC1Q02896 317 aa1.7□□□□□ -2.14
UPF3YGR072W YMR252CQ04814 134 aa1.7□□□□□ -2.14
UPF3YGR072W YPR114WQ06107 315 aa1.7□□□□□ -2.14
UPF3YGR072W YOR1P53049 1477 aa1.69□□□□□ -2.14
UPF3YGR072W RPS25BP0C0T4 108 aaKnown RBP1.69□□□□□ -2.14
UPF3YGR072W UBC8P28263 218 aa1.69□□□□□ -2.14
UPF3YGR072W ATP19P81451 68 aa1.69□□□□□ -2.14
UPF3YGR072W ELP6Q04868 273 aa1.69□□□□□ -2.14
UPF3YGR072W RPS25AQ3E792 108 aaPredicted RBP1.69□□□□□ -2.14
UPF3YGR072W FAS1P07149 2051 aaKnown RBP1.69□□□□□ -2.14
UPF3YGR072W INO4P13902 151 aa1.68□□□□□ -2.14
UPF3YGR072W CIN5P40917 295 aa1.68□□□□□ -2.14
UPF3YGR072W YFL065CP43539 102 aa1.68□□□□□ -2.14
UPF3YGR072W RBL2P48606 106 aaKnown RBP1.68□□□□□ -2.14
UPF3YGR072W YDR366CP87287 132 aa1.68□□□□□ -2.14
UPF3YGR072W ADE6P38972 1358 aaKnown RBP1.68□□□□□ -2.14
UPF3YGR072W SPA2P23201 1466 aaKnown RBP1.68□□□□□ -2.14
UPF3YGR072W YLR422WQ06409 1932 aa1.68□□□□□ -2.14
UPF3YGR072W PHO13P19881 312 aa1.67□□□□□ -2.14
UPF3YGR072W AHT1P29589 182 aa1.67□□□□□ -2.14
UPF3YGR072W MRPL24P36525 258 aaPredicted RBP1.67□□□□□ -2.14
UPF3YGR072W ETR1P38071 380 aa1.67□□□□□ -2.14
UPF3YGR072W RPC19P28000 142 aaKnown RBP1.66□□□□□ -2.14
UPF3YGR072W GEP7P53171 287 aa1.66□□□□□ -2.14
UPF3YGR072W CYR1P08678 2026 aaKnown RBP1.66□□□□□ -2.14
UPF3YGR072W TAF2P23255 1407 aa1.66□□□□□ -2.14
UPF3YGR072W UBR2Q07963 1872 aa1.65□□□□□ -2.14
UPF3YGR072W YGL041W-AP0C5N3 154 aa1.65□□□□□ -2.15
UPF3YGR072W PRE1P22141 198 aaKnown RBP1.65□□□□□ -2.15
UPF3YGR072W HSP12P22943 109 aaKnown RBP1.65□□□□□ -2.15
UPF3YGR072W MRS4P23500 304 aa1.65□□□□□ -2.15
UPF3YGR072W YEL008WP40001 126 aa1.65□□□□□ -2.15
UPF3YGR072W YJL218WP40892 196 aaKnown RBP1.65□□□□□ -2.15
UPF3YGR072W GPI2P46961 280 aa1.65□□□□□ -2.15
UPF3YGR072W HHO1P53551 258 aa1.65□□□□□ -2.15
UPF3YGR072W COA3Q3E7B2 85 aa1.65□□□□□ -2.15
UPF3YGR072W YCL042WP25572 119 aa1.64□□□□□ -2.15
UPF3YGR072W RCF2P53721 224 aa1.64□□□□□ -2.15
UPF3YGR072W EST3Q03096 181 aa1.64□□□□□ -2.15
UPF3YGR072W FMN1Q03778 218 aa1.64□□□□□ -2.15
UPF3YGR072W NMA1Q06178 401 aaKnown RBP1.64□□□□□ -2.15
UPF3YGR072W KEI1Q06346 221 aa1.64□□□□□ -2.15
UPF3YGR072W YDL241WQ07738 123 aa1.64□□□□□ -2.15
UPF3YGR072W RFU1Q08003 200 aa1.64□□□□□ -2.15
UPF3YGR072W TAR1Q8TGM6 124 aa1.64□□□□□ -2.15
UPF3YGR072W SPT14P32363 452 aa1.63□□□□□ -2.15
UPF3YGR072W YBR242WP38331 238 aa1.63□□□□□ -2.15
UPF3YGR072W YGR201CP42936 225 aa1.63□□□□□ -2.15
Retrieved 100 of 5,963 RNA–protein pairs in 17.9 ms