RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	YNL140C	P53910	189 aa		0.91	□□□□□ -2.26
RSM28	YDR494W	GIM5	Q04493	163 aa		0.91	□□□□□ -2.26
RSM28	YDR494W	PEX11	Q12462	236 aa		0.91	□□□□□ -2.26
RSM28	YDR494W	RAD6	P06104	172 aa		0.9	□□□□□ -2.27
RSM28	YDR494W	TRR1	P29509	319 aa	Known RBP	0.9	□□□□□ -2.27
RSM28	YDR494W	UGX2	P32772	223 aa		0.9	□□□□□ -2.27
RSM28	YDR494W	YAR064W	P39563	99 aa		0.9	□□□□□ -2.27
RSM28	YDR494W	YER121W	P40076	114 aa		0.9	□□□□□ -2.27
RSM28	YDR494W	MOB1	P40484	314 aa		0.9	□□□□□ -2.27
RSM28	YDR494W	YIL102C	P40488	101 aa		0.9	□□□□□ -2.27
RSM28	YDR494W	SOL1	P50278	321 aa		0.9	□□□□□ -2.27
RSM28	YDR494W	DCV1	P43595	202 aa		0.89	□□□□□ -2.27
RSM28	YDR494W	SRP14	P38985	146 aa		0.88	□□□□□ -2.27
RSM28	YDR494W	GLR1	P41921	483 aa	Known RBP	0.88	□□□□□ -2.27
RSM28	YDR494W	HSK3	P69852	69 aa		0.88	□□□□□ -2.27
RSM28	YDR494W	HRD1	Q08109	551 aa		0.88	□□□□□ -2.27
RSM28	YDR494W	CMC2	Q3E7A4	109 aa		0.88	□□□□□ -2.27
RSM28	YDR494W	ARC19	P33204	171 aa	Known RBP	0.87	□□□□□ -2.27
RSM28	YDR494W	YEL073C	P39974	107 aa		0.87	□□□□□ -2.27
RSM28	YDR494W	XPT1	P47165	209 aa		0.87	□□□□□ -2.27
RSM28	YDR494W	YDL157C	Q12082	118 aa		0.87	□□□□□ -2.27
RSM28	YDR494W	CCW12	Q12127	133 aa		0.87	□□□□□ -2.27
RSM28	YDR494W	TRM3	Q07527	1436 aa		0.87	□□□□□ -2.27
RSM28	YDR494W	FMP49	A0A023PZB3	126 aa		0.86	□□□□□ -2.27
RSM28	YDR494W	FES1	P38260	290 aa		0.86	□□□□□ -2.27
RSM28	YDR494W	CSH1	P38287	376 aa		0.86	□□□□□ -2.27
RSM28	YDR494W	YJR015W	P47090	510 aa		0.86	□□□□□ -2.27
RSM28	YDR494W	PAC10	P48363	199 aa		0.86	□□□□□ -2.27
RSM28	YDR494W	YML079W	Q03629	201 aa		0.86	□□□□□ -2.27
RSM28	YDR494W	PLP1	Q04004	230 aa		0.86	□□□□□ -2.27
RSM28	YDR494W	AVO2	Q04749	426 aa		0.86	□□□□□ -2.27
RSM28	YDR494W	PRE1	P22141	198 aa	Known RBP	0.85	□□□□□ -2.27
RSM28	YDR494W	NUF2	P33895	451 aa		0.85	□□□□□ -2.27
RSM28	YDR494W	VPS51	P36116	164 aa		0.85	□□□□□ -2.27
RSM28	YDR494W	SHB17	P36136	271 aa	Known RBP	0.85	□□□□□ -2.27
RSM28	YDR494W	YKR070W	P36151	352 aa	Known RBP	0.85	□□□□□ -2.27
RSM28	YDR494W	YLR050C	Q12155	161 aa	Known RBP	0.85	□□□□□ -2.27
RSM28	YDR494W	UBC6	P33296	250 aa	Predicted RBP	0.84	□□□□□ -2.27
RSM28	YDR494W	YEL028W	P39989	153 aa		0.84	□□□□□ -2.27
RSM28	YDR494W	YGR269W	P40326	108 aa		0.84	□□□□□ -2.27
RSM28	YDR494W	YGL230C	P53074	147 aa		0.84	□□□□□ -2.27
RSM28	YDR494W	NQM1	P53228	333 aa	Predicted RBP	0.84	□□□□□ -2.27
RSM28	YDR494W	SYM1	Q06563	197 aa		0.84	□□□□□ -2.27
RSM28	YDR494W	AME1	P38313	324 aa		0.83	□□□□□ -2.28
RSM28	YDR494W	SLM6	P38343	150 aa		0.83	□□□□□ -2.28
RSM28	YDR494W	YDC1	Q02896	317 aa		0.83	□□□□□ -2.28
RSM28	YDR494W	THI74	Q04083	370 aa		0.83	□□□□□ -2.28
RSM28	YDR494W	RDI1	Q12434	202 aa		0.83	□□□□□ -2.28
RSM28	YDR494W	CMD1	P06787	147 aa	Known RBP	0.82	□□□□□ -2.28
RSM28	YDR494W	QCR2	P07257	368 aa		0.82	□□□□□ -2.28
RSM28	YDR494W	DER1	P38307	211 aa		0.82	□□□□□ -2.28
RSM28	YDR494W	ORM1	P53224	222 aa		0.82	□□□□□ -2.28
RSM28	YDR494W	LIP1	Q03579	150 aa		0.82	□□□□□ -2.28
RSM28	YDR494W	KEI1	Q06346	221 aa		0.82	□□□□□ -2.28
RSM28	YDR494W	YLR053C	Q12026	108 aa		0.82	□□□□□ -2.28
RSM28	YDR494W	NSL1	Q12143	216 aa		0.82	□□□□□ -2.28
RSM28	YDR494W	RIF1	P29539	1916 aa		0.81	□□□□□ -2.28
RSM28	YDR494W	SPS2	P08459	502 aa		0.81	□□□□□ -2.28
RSM28	YDR494W	RPS25B	P0C0T4	108 aa	Known RBP	0.81	□□□□□ -2.28
RSM28	YDR494W	UBI4	P0CG63	381 aa	Known RBP	0.81	□□□□□ -2.28
RSM28	YDR494W	PTC1	P35182	281 aa		0.81	□□□□□ -2.28
RSM28	YDR494W	YGL101W	P53144	215 aa		0.81	□□□□□ -2.28
RSM28	YDR494W	UIP4	Q08926	304 aa		0.81	□□□□□ -2.28
RSM28	YDR494W	YPR202W	Q08993	238 aa		0.81	□□□□□ -2.28
RSM28	YDR494W	FCY1	Q12178	158 aa		0.81	□□□□□ -2.28
RSM28	YDR494W	RPS25A	Q3E792	108 aa	Predicted RBP	0.81	□□□□□ -2.28
RSM28	YDR494W	FIG1	P38224	298 aa		0.8	□□□□□ -2.28
RSM28	YDR494W	GEP7	P53171	287 aa		0.8	□□□□□ -2.28
RSM28	YDR494W	EFM5	P53200	248 aa	Known RBP	0.8	□□□□□ -2.28
RSM28	YDR494W	PET20	Q99373	253 aa		0.8	□□□□□ -2.28
RSM28	YDR494W	KIN28	P06242	306 aa		0.79	□□□□□ -2.28
RSM28	YDR494W	FIP1	P45976	327 aa		0.79	□□□□□ -2.28
RSM28	YDR494W	LSM3	P57743	89 aa	Known RBP	0.79	□□□□□ -2.28
RSM28	YDR494W	TMA23	Q03525	211 aa		0.79	□□□□□ -2.28
RSM28	YDR494W	YLR046C	Q12253	270 aa		0.79	□□□□□ -2.28
RSM28	YDR494W	EFG1	Q3E705	233 aa	Known RBP	0.79	□□□□□ -2.28
RSM28	YDR494W	RPS28B	P0C0X0	67 aa	Known RBP	0.78	□□□□□ -2.28
RSM28	YDR494W	RPL30	P14120	105 aa	Known RBP	0.78	□□□□□ -2.28
RSM28	YDR494W	YCR001W	P25347	104 aa		0.78	□□□□□ -2.28
RSM28	YDR494W	TMA20	P89886	181 aa	Predicted RBP	0.78	□□□□□ -2.28
RSM28	YDR494W	ATG10	Q07879	167 aa		0.78	□□□□□ -2.28
RSM28	YDR494W	RPS28A	Q3E7X9	67 aa	Predicted RBP	0.78	□□□□□ -2.28
RSM28	YDR494W	HFA1	P32874	2273 aa		0.78	□□□□□ -2.28
RSM28	YDR494W	TAF2	P23255	1407 aa		0.78	□□□□□ -2.28
RSM28	YDR494W	ATP5	P09457	212 aa		0.77	□□□□□ -2.29
RSM28	YDR494W	SRP102	P36057	244 aa	Predicted RBP	0.77	□□□□□ -2.29
RSM28	YDR494W	DLS1	P40366	167 aa		0.77	□□□□□ -2.29
RSM28	YDR494W	APQ12	P40532	138 aa		0.77	□□□□□ -2.29
RSM28	YDR494W	CIN5	P40917	295 aa		0.77	□□□□□ -2.29
RSM28	YDR494W	APS3	P47064	194 aa		0.77	□□□□□ -2.29
RSM28	YDR494W	CCC1	P47818	322 aa		0.77	□□□□□ -2.29
RSM28	YDR494W	YDR102C	Q03864	110 aa		0.77	□□□□□ -2.29
RSM28	YDR494W	YPR114W	Q06107	315 aa		0.77	□□□□□ -2.29
RSM28	YDR494W	YDL241W	Q07738	123 aa		0.77	□□□□□ -2.29
RSM28	YDR494W	INO4	P13902	151 aa		0.76	□□□□□ -2.29
RSM28	YDR494W	MRS4	P23500	304 aa		0.76	□□□□□ -2.29
RSM28	YDR494W	PEX34	P25584	144 aa		0.76	□□□□□ -2.29
RSM28	YDR494W	BUB2	P26448	306 aa	Predicted RBP	0.76	□□□□□ -2.29
RSM28	YDR494W	YER181C	P40097	107 aa		0.76	□□□□□ -2.29
RSM28	YDR494W	YJL218W	P40892	196 aa	Known RBP	0.76	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms