RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C YJL225CP40889 1758 aa3.28□□□□□ -1.88
CDC9YDL164C RCN1P36054 211 aa3.28□□□□□ -1.88
CDC9YDL164C SHE2P36068 246 aaKnown RBP RIP-Chip data3.28□□□□□ -1.88not detected
CDC9YDL164C FCY21P40039 528 aa3.28□□□□□ -1.88
CDC9YDL164C IRC25Q07951 179 aa3.28□□□□□ -1.88
CDC9YDL164C YPL264CQ08980 353 aa3.28□□□□□ -1.88
CDC9YDL164C FLO11P08640 1367 aa3.28□□□□□ -1.88
CDC9YDL164C BET1P22804 142 aa3.28□□□□□ -1.88
CDC9YDL164C YET1P35723 206 aa3.28□□□□□ -1.88
CDC9YDL164C PFS2P42841 465 aaKnown RBP3.28□□□□□ -1.88
CDC9YDL164C YNR062CP53748 327 aa3.28□□□□□ -1.88
CDC9YDL164C CNL1Q06333 122 aa3.28□□□□□ -1.88
CDC9YDL164C MCH1Q07376 486 aa3.28□□□□□ -1.88
CDC9YDL164C SPT15P13393 240 aaKnown RBP3.27□□□□□ -1.89
CDC9YDL164C ETR1P38071 380 aa3.27□□□□□ -1.89
CDC9YDL164C NSG1P38837 291 aa3.27□□□□□ -1.89
CDC9YDL164C VMA7P39111 118 aa3.27□□□□□ -1.89
CDC9YDL164C ALG9P53868 555 aaKnown RBP3.27□□□□□ -1.89
CDC9YDL164C YDR391CQ04170 232 aa3.27□□□□□ -1.89
CDC9YDL164C ATG39Q06159 398 aa3.27□□□□□ -1.89
CDC9YDL164C PRP11Q07350 266 aaPredicted RBP3.27□□□□□ -1.89
CDC9YDL164C UIP4Q08926 304 aa3.27□□□□□ -1.89
CDC9YDL164C TY1B-NL2Q99337 1749 aaKnown RBP3.27□□□□□ -1.89
CDC9YDL164C YDR366CP87287 132 aa3.27□□□□□ -1.89
CDC9YDL164C YLR281CQ05863 155 aa3.27□□□□□ -1.89
CDC9YDL164C FMP49A0A023PZB3 126 aa3.26□□□□□ -1.89
CDC9YDL164C TFC1P32367 649 aa3.26□□□□□ -1.89
CDC9YDL164C SUI1P32911 108 aaKnown RBP3.26□□□□□ -1.89
CDC9YDL164C YPT53P36019 220 aa3.26□□□□□ -1.89
CDC9YDL164C SHB17P36136 271 aaKnown RBP3.26□□□□□ -1.89
CDC9YDL164C SMX2P40204 77 aaKnown RBP3.26□□□□□ -1.89
CDC9YDL164C MPC3P53311 146 aa3.26□□□□□ -1.89
CDC9YDL164C YDR274CP87283 123 aa3.26□□□□□ -1.89
CDC9YDL164C SCW10Q04951 389 aa3.26□□□□□ -1.89
CDC9YDL164C COA4Q05809 96 aa3.26□□□□□ -1.89
CDC9YDL164C YRF1-1P0CX20 1796 aa3.26□□□□□ -1.89
CDC9YDL164C YRF1-5P0CX21 1796 aa3.26□□□□□ -1.89
CDC9YDL164C YRF1-8P0CX22 1796 aa3.26□□□□□ -1.89
CDC9YDL164C TIR1P10863 254 aa3.26□□□□□ -1.89
CDC9YDL164C PHO85P17157 305 aa3.26□□□□□ -1.89
CDC9YDL164C MRPL24P36525 258 aaPredicted RBP3.26□□□□□ -1.89
CDC9YDL164C BUD25P85052 153 aa3.26□□□□□ -1.89
CDC9YDL164C CGI121Q03705 181 aaKnown RBP3.26□□□□□ -1.89
CDC9YDL164C YDR102CQ03864 110 aa3.26□□□□□ -1.89
CDC9YDL164C SDH7Q04401 133 aa3.26□□□□□ -1.89
CDC9YDL164C SPC3Q12133 184 aa3.26□□□□□ -1.89
CDC9YDL164C FYV7Q12247 151 aa3.26□□□□□ -1.89
CDC9YDL164C ATP14Q12349 124 aa3.26□□□□□ -1.89
CDC9YDL164C YNL162W-AQ3E7A8 72 aa3.26□□□□□ -1.89
CDC9YDL164C YPR014CQ6B0W2 109 aa3.26□□□□□ -1.89
CDC9YDL164C YAR023CD6VPM8 179 aa3.25□□□□□ -1.89
CDC9YDL164C YBL059WP34224 193 aa3.25□□□□□ -1.89
CDC9YDL164C YIR021W-AQ3E739 70 aa3.25□□□□□ -1.89
CDC9YDL164C DDI2P0CH63 225 aa3.24□□□□□ -1.89
CDC9YDL164C DDI3P0CH64 225 aa3.24□□□□□ -1.89
CDC9YDL164C URA5P13298 226 aaKnown RBP3.24□□□□□ -1.89
CDC9YDL164C MRPL17P36528 281 aa3.24□□□□□ -1.89
CDC9YDL164C TVP18Q04767 167 aa3.24□□□□□ -1.89
CDC9YDL164C YOR268CQ08734 132 aa3.24□□□□□ -1.89
CDC9YDL164C ATP20Q12233 115 aa3.24□□□□□ -1.89
CDC9YDL164C CCA1P21269 546 aa3.24□□□□□ -1.89
CDC9YDL164C YBR220CP38318 560 aa3.24□□□□□ -1.89
CDC9YDL164C RGI1P40043 161 aaPredicted RBP3.24□□□□□ -1.89
CDC9YDL164C AYR1P40471 297 aa3.24□□□□□ -1.89
CDC9YDL164C YGR039WP53225 103 aa3.24□□□□□ -1.89
CDC9YDL164C HHO1P53551 258 aa3.24□□□□□ -1.89
CDC9YDL164C GAL83Q04739 417 aa3.24□□□□□ -1.89
CDC9YDL164C SLD7Q08457 257 aa3.24□□□□□ -1.89
CDC9YDL164C YLR118CQ12354 227 aa3.24□□□□□ -1.89
CDC9YDL164C YLR412C-AQ3E742 68 aa3.24□□□□□ -1.89
CDC9YDL164C YMR230W-AQ3E7B5 62 aa3.24□□□□□ -1.89
CDC9YDL164C TIM9O74700 87 aa3.23□□□□□ -1.89
CDC9YDL164C YER039C-AP0CD97 72 aa3.23□□□□□ -1.89
CDC9YDL164C MRS4P23500 304 aa3.23□□□□□ -1.89
CDC9YDL164C RNP1P32385 249 aa3.23□□□□□ -1.89
CDC9YDL164C GPI18P38211 433 aa3.23□□□□□ -1.89
CDC9YDL164C AIM2P39721 246 aa3.23□□□□□ -1.89
CDC9YDL164C YEL028WP39989 153 aa3.23□□□□□ -1.89
CDC9YDL164C ECO1P43605 281 aa3.23□□□□□ -1.89
CDC9YDL164C XPT1P47165 209 aa3.23□□□□□ -1.89
CDC9YDL164C YLR042CQ07990 161 aa3.23□□□□□ -1.89
CDC9YDL164C FAS2P19097 1887 aaKnown RBP3.23□□□□□ -1.89
CDC9YDL164C COX4P04037 155 aa3.23□□□□□ -1.89
CDC9YDL164C RAD10P06838 210 aa3.23□□□□□ -1.89
CDC9YDL164C SNC2P33328 115 aa3.23□□□□□ -1.89
CDC9YDL164C FMP46P36141 133 aaKnown RBP3.23□□□□□ -1.89
CDC9YDL164C YBR032WP38223 100 aa3.23□□□□□ -1.89
CDC9YDL164C AVT2P39981 480 aa3.23□□□□□ -1.89
CDC9YDL164C CAX4P53223 239 aa3.23□□□□□ -1.89
CDC9YDL164C TMA23Q03525 211 aa3.23□□□□□ -1.89
CDC9YDL164C YOR214CQ12282 236 aa3.23□□□□□ -1.89
CDC9YDL164C PST1Q12355 444 aa3.23□□□□□ -1.89
CDC9YDL164C YOR376W-AQ3E805 51 aa3.23□□□□□ -1.89
CDC9YDL164C FAS1P07149 2051 aaKnown RBP3.22□□□□□ -1.89
CDC9YDL164C SRP21P32342 167 aa3.22□□□□□ -1.89
CDC9YDL164C SKG1P36169 355 aa3.22□□□□□ -1.89
CDC9YDL164C YHR125WP38831 101 aa3.22□□□□□ -1.89
CDC9YDL164C FIS1P40515 155 aa3.22□□□□□ -1.89
CDC9YDL164C YNL033WP53964 284 aa3.22□□□□□ -1.89
CDC9YDL164C YNL019CP53975 284 aa3.22□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms