RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	CYP11A1	P05108	521 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	CFH	P08603	1231 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	CSF2RA	P15509	400 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	IGFBP6	P24592	240 aa	Predicted RBP	12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	CDH5	P33151	784 aa	Predicted RBP	12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	LHX1	P48742	406 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	NOMO3	P69849	1222 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	GPC5	P78333	572 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	CENPC	Q03188	943 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	TCEAL1	Q15170	157 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	IFI16	Q16666	785 aa	Known RBP	12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	TIGD5	Q53EQ6	642 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	WSCD1	Q658N2	575 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	CD300LG	Q6UXG3	332 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	SYT10	Q6XYQ8	523 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	ACOT1	Q86TX2	421 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	METTL23	Q86XA0	190 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	ADGRF2	Q8IZF7	708 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	TMEM35B	Q8NCS4	154 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	CPA5	Q8WXQ8	436 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	RABGGTA	Q92696	567 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	TRIM11	Q96F44	468 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	TNIP3	Q96KP6	325 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	IRX2	Q9BZI1	471 aa	Predicted RBP	12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	IL23A	Q9NPF7	189 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	PRKAG2	Q9UGJ0	569 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	DSE	Q9UL01	958 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	CEP83	Q9Y592	693 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	PAXBP1	Q9Y5B6	917 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	TSC2	P49815	1807 aa		12.51	□□□□□ -0.41
CLN6-223	ENST00000637823	MACROD2	A1Z1Q3	448 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	TBKBP1	A7MCY6	615 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	TRAPPC3	O43617	180 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	BAIAP3	O94812	1187 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	ALDH2	P05091	517 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	PDGFRB	P09619	1106 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	MYBL1	P10243	752 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	ODC1	P11926	461 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	ABCB4	P21439	1286 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	CASQ1	P31415	396 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	NSF	P46459	744 aa	Known RBP	12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	ORC1	Q13415	861 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	PPIG	Q13427	754 aa	Known RBP eCLIP	12.5	□□□□□ -0.41	7e-7	■□□□□ 9.4
CLN6-223	ENST00000637823	NAA35	Q5VZE5	725 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	LCLAT1	Q6UWP7	414 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	OSTM1	Q86WC4	334 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	DNAAF5	Q86Y56	855 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	PHF13	Q86YI8	300 aa	Predicted RBP	12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	MCOLN2	Q8IZK6	566 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	TRIM58	Q8NG06	486 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	KIF18A	Q8NI77	898 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	TOP1MT	Q969P6	601 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	SUSD3	Q96L08	255 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	NOX5	Q96PH1	765 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	COLEC11	Q9BWP8	271 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	THAP2	Q9H0W7	228 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	NRDE2	Q9H7Z3	1164 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	DNAI1	Q9UI46	699 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	SALL4	Q9UJQ4	1053 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	12.5	□□□□□ -0.41
CLN6-223	ENST00000637823	NCAN	O14594	1321 aa		12.5	□□□□□ -0.41
CLN6-223	ENST00000637823		O00370	1275 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	B4GALT3	O60512	393 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	CAPN15	O75808	1086 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	DGKI	O75912	1065 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	UPP2	O95045	317 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	MOCS3	O95396	460 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	CYP1A2	P05177	515 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	PTPN1	P18031	435 aa	Known RBP	12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	TYMP	P19971	482 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	LMO2	P25791	158 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	SSTR3	P32745	418 aa	Predicted RBP	12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	NOP2	P46087	812 aa	Known RBP	12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	OR1G1	P47890	313 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	GATM	P50440	423 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	NAP1L1	P55209	391 aa	Known RBP	12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	C1QBP	Q07021	282 aa	Known RBP	12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	LIN9	Q5TKA1	542 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	ARHGAP17	Q68EM7	881 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	DENND1B	Q6P3S1	775 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	PASD1	Q8IV76	773 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	RHOT2	Q8IXI1	618 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	SLC35F6	Q8N357	371 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	WDTC1	Q8N5D0	677 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	SLC35G2	Q8TBE7	412 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	RFFL	Q8WZ73	363 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	ZNF592	Q92610	1267 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	WDR24	Q96S15	920 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	TMEM175	Q9BSA9	504 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	AVEN	Q9NQS1	362 aa	Predicted RBP	12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	ADAM22	Q9P0K1	906 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	DNAJB4	Q9UDY4	337 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	GTF3C4	Q9UKN8	822 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	PCDHB8	Q9UN66	801 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	FAN1	Q9Y2M0	1017 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	NME7	Q9Y5B8	376 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	PTPRS	Q13332	1948 aa		12.49	□□□□□ -0.41
CLN6-223	ENST00000637823	NRP1	O14786	923 aa		12.48	□□□□□ -0.41
CLN6-223	ENST00000637823	BUB1	O43683	1085 aa		12.48	□□□□□ -0.41

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