RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 FAM83BQ5T0W9 1011 aa7.18□□□□□ -1.26
SCN1A-213ENST00000636759 FASTKD5Q7L8L6 764 aaKnown RBP7.18□□□□□ -1.26
SCN1A-213ENST00000636759 TMPRSS6Q8IU80 811 aa7.18□□□□□ -1.26
SCN1A-213ENST00000636759 GALNT4Q8N4A0 578 aa7.18□□□□□ -1.26
SCN1A-213ENST00000636759 GIMAP8Q8ND71 665 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-213ENST00000636759 SLC26A7Q8TE54 656 aa7.18□□□□□ -1.26
SCN1A-213ENST00000636759 SPOCK2Q92563 424 aa7.18□□□□□ -1.26
SCN1A-213ENST00000636759 FERMT1Q9BQL6 677 aa7.18□□□□□ -1.26
SCN1A-213ENST00000636759 UNKQ9C0B0 810 aaKnown RBP7.18□□□□□ -1.26
SCN1A-213ENST00000636759 CDC42EP4Q9H3Q1 356 aaKnown RBP7.18□□□□□ -1.26
SCN1A-213ENST00000636759 HACD3Q9P035 362 aa7.18□□□□□ -1.26
SCN1A-213ENST00000636759 CEP72Q9P209 647 aa7.18□□□□□ -1.26
SCN1A-213ENST00000636759 APPL1Q9UKG1 709 aa7.18□□□□□ -1.26
SCN1A-213ENST00000636759 GTF3C4Q9UKN8 822 aa7.18□□□□□ -1.26
SCN1A-213ENST00000636759 DIS3Q9Y2L1 958 aaKnown RBP7.18□□□□□ -1.26
SCN1A-213ENST00000636759 SLC4A4Q9Y6R1 1079 aa7.18□□□□□ -1.26
SCN1A-213ENST00000636759 MYH4Q9Y623 1939 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 A0A1W2PQ67 120 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 AP3B1O00203 1094 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 AP1G1O43747 822 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 TSPAN9O75954 239 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 DDX5P17844 614 aaKnown RBP7.17□□□□□ -1.26
SCN1A-213ENST00000636759 LMNB1P20700 586 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 CIITAP33076 1130 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 UBA7P41226 1012 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 SLC5A3P53794 718 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 ACTR3P61158 418 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 ASIC1P78348 528 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 DNAL1Q4LDG9 190 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 LPCAT4Q643R3 524 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 HGSNATQ68CP4 663 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 SPOPLQ6IQ16 392 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 AAGABQ6PD74 315 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 UGT2A3Q6UWM9 527 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 FBXO33Q7Z6M2 555 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 CCDC105Q8IYK2 499 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 KIAA2013Q8IYS2 634 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 MYO1HQ8N1T3 1032 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 TPCN2Q8NHX9 752 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 SYN2Q92777 582 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-213ENST00000636759 ZKSCAN3Q9BRR0 538 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 IRF2BPLQ9H1B7 796 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 SNX25Q9H3E2 840 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 ZNF287Q9HBT7 754 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 DTNAQ9Y4J8 743 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 A0A088AWK7 358 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 GNPATO15228 680 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 RHOBTB3O94955 611 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 H2AFZP0C0S5 128 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 CA4P22748 312 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 CHRNA3P32297 505 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 SLC16A2P36021 539 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 RPL21P46778 160 aaKnown RBP7.17□□□□□ -1.26
SCN1A-213ENST00000636759 HIRAP54198 1017 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-213ENST00000636759 ADAM17P78536 824 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 KCNJ8Q15842 424 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 PHKG1Q16816 387 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 RABGAP1LQ5R372 815 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 TMCO4Q5TGY1 634 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 ITPRIPL1Q6GPH6 555 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 RWDD4Q6NW29 188 aaKnown RBP7.17□□□□□ -1.26
SCN1A-213ENST00000636759 CCDC81Q6ZN84 652 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 H2AFVQ71UI9 128 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 SLC25A41Q8N5S1 370 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 ESX1Q8N693 406 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 METTL25Q8N6Q8 603 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 RNF169Q8NCN4 708 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 FAM172AQ8WUF8 416 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 OSCP1Q8WVF1 389 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 SCFD1Q8WVM8 642 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 ERLEC1Q96DZ1 483 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 PLEKHA8Q96JA3 519 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 GJD4Q96KN9 370 aaPredicted RBP7.17□□□□□ -1.26
SCN1A-213ENST00000636759 GCNAQ96QF7 691 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 LSM14BQ9BX40 385 aaKnown RBP7.17□□□□□ -1.26
SCN1A-213ENST00000636759 NYXQ9GZU5 481 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 RBM38Q9H0Z9 239 aaKnown RBP7.17□□□□□ -1.26
SCN1A-213ENST00000636759 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.17□□□□□ -1.26
SCN1A-213ENST00000636759 ADAMTSL1Q8N6G6 1762 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 FAM205AQ6ZU69 1335 aa7.17□□□□□ -1.26
SCN1A-213ENST00000636759 FOXO6A8MYZ6 492 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 MAGEB2O15479 319 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ITM2AO43736 263 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 EDIL3O43854 480 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 UBL4AP11441 157 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 HSPA6P17066 643 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 KRT15P19012 456 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 KCNQ4P56696 695 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 POU5F1Q01860 360 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 NCOA4Q13772 614 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 EDRF1Q3B7T1 1238 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ZNF829Q3KNS6 432 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ADGRG6Q86SQ4 1221 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 SRBD1Q8N5C6 995 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 CEP63Q96MT8 703 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 TTC25Q96NG3 672 aa7.16□□□□□ -1.26
SCN1A-213ENST00000636759 C2orf49Q9BVC5 232 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 SENP6Q9GZR1 1112 aaPredicted RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 LIN28AQ9H9Z2 209 aaKnown RBP7.16□□□□□ -1.26
SCN1A-213ENST00000636759 ARPP21Q9UBL0 812 aaPredicted RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms