RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 PYM1Q9BRP8 204 aaKnown RBP25.7■■□□□ 1.7
CPSF1-214ENST00000622776 RTKNQ9BST9 563 aa25.7■■□□□ 1.7
CPSF1-214ENST00000622776 ST6GALNAC4Q9H4F1 302 aa25.7■■□□□ 1.7
CPSF1-214ENST00000622776 NUP210Q8TEM1 1887 aaPredicted RBP25.7■■□□□ 1.7
CPSF1-214ENST00000622776 CNR2P34972 360 aa25.69■■□□□ 1.7
CPSF1-214ENST00000622776 SMARCB1Q12824 385 aa25.69■■□□□ 1.7
CPSF1-214ENST00000622776 PON2Q15165 354 aa25.69■■□□□ 1.7
CPSF1-214ENST00000622776 TAF12Q16514 161 aa25.69■■□□□ 1.7
CPSF1-214ENST00000622776 WSCD1Q658N2 575 aa25.69■■□□□ 1.7
CPSF1-214ENST00000622776 LRRTM3Q86VH5 581 aa25.69■■□□□ 1.7
CPSF1-214ENST00000622776 LONP2Q86WA8 852 aa25.69■■□□□ 1.7
CPSF1-214ENST00000622776 GIPC2Q8TF65 315 aa25.69■■□□□ 1.7
CPSF1-214ENST00000622776 C2orf15Q8WU43 125 aaKnown RBP25.69■■□□□ 1.7
CPSF1-214ENST00000622776 CCSER1Q9C0I3 900 aa25.69■■□□□ 1.7
CPSF1-214ENST00000622776 DCDC2BA2VCK2 349 aa25.68■■□□□ 1.7
CPSF1-214ENST00000622776 LRP3O75074 770 aa25.68■■□□□ 1.7
CPSF1-214ENST00000622776 HAPLN1P10915 354 aaPredicted RBP25.68■■□□□ 1.7
CPSF1-214ENST00000622776 DDIT3P35638 169 aa25.68■■□□□ 1.7
CPSF1-214ENST00000622776 POU5F1Q01860 360 aaKnown RBP25.68■■□□□ 1.7
CPSF1-214ENST00000622776 TNK2Q07912 1038 aa25.68■■□□□ 1.7
CPSF1-214ENST00000622776 SRSF5Q13243 272 aaKnown RBP25.68■■□□□ 1.7
CPSF1-214ENST00000622776 SF3A1Q15459 793 aaKnown RBP25.68■■□□□ 1.7
CPSF1-214ENST00000622776 HEATR6Q6AI08 1181 aaKnown RBP25.68■■□□□ 1.7
CPSF1-214ENST00000622776 BRAPQ7Z569 592 aa25.68■■□□□ 1.7
CPSF1-214ENST00000622776 KRI1Q8N9T8 703 aaKnown RBP25.68■■□□□ 1.7
CPSF1-214ENST00000622776 SPPL2BQ8TCT7 592 aa25.68■■□□□ 1.7
CPSF1-214ENST00000622776 SLC46A2Q9BY10 475 aa25.68■■□□□ 1.7
CPSF1-214ENST00000622776 IKZF4Q9H2S9 585 aa25.68■■□□□ 1.7
CPSF1-214ENST00000622776 C2orf42Q9NWW7 574 aa25.68■■□□□ 1.7
CPSF1-214ENST00000622776 DYNC1LI1Q9Y6G9 523 aaKnown RBP25.68■■□□□ 1.7
CPSF1-214ENST00000622776 CCINQ13939 588 aa25.67■■□□□ 1.7
CPSF1-214ENST00000622776 ITPRIPL2Q3MIP1 535 aa25.67■■□□□ 1.7
CPSF1-214ENST00000622776 CRELD2Q6UXH1 353 aaPredicted RBP25.67■■□□□ 1.7
CPSF1-214ENST00000622776 ZNF720Q7Z2F6 126 aa25.67■■□□□ 1.7
CPSF1-214ENST00000622776 EFCAB13Q8IY85 973 aa25.67■■□□□ 1.7
CPSF1-214ENST00000622776 SMG9Q9H0W8 520 aaKnown RBP25.67■■□□□ 1.7
CPSF1-214ENST00000622776 THG1LQ9NWX6 298 aaKnown RBP25.67■■□□□ 1.7
CPSF1-214ENST00000622776 ABI2Q9NYB9 513 aaPredicted RBP25.67■■□□□ 1.7
CPSF1-214ENST00000622776 RALGAPA1Q6GYQ0 2036 aa25.66■■□□□ 1.7
CPSF1-214ENST00000622776 MCM2P49736 904 aa25.66■■□□□ 1.7
CPSF1-214ENST00000622776 POSTNQ15063 836 aa25.66■■□□□ 1.7
CPSF1-214ENST00000622776 SFR1Q86XK3 245 aa25.66■■□□□ 1.7
CPSF1-214ENST00000622776 SYNPOQ8N3V7 929 aa25.66■■□□□ 1.7
CPSF1-214ENST00000622776 POMGNT1Q8WZA1 660 aa25.66■■□□□ 1.7
CPSF1-214ENST00000622776 GKN1Q9NS71 199 aa25.66■■□□□ 1.7
CPSF1-214ENST00000622776 ZMYM5Q9UJ78 669 aa25.66■■□□□ 1.7
CPSF1-214ENST00000622776 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.66■■□□□ 1.7
CPSF1-214ENST00000622776 CHD8Q9HCK8 2581 aa25.65■■□□□ 1.7
CPSF1-214ENST00000622776 KPNA7A9QM74 516 aa25.65■■□□□ 1.7
CPSF1-214ENST00000622776 ADSSP30520 456 aa25.65■■□□□ 1.7
CPSF1-214ENST00000622776 HOXA6P31267 233 aa25.65■■□□□ 1.7
CPSF1-214ENST00000622776 SV2CQ496J9 727 aa25.65■■□□□ 1.7
CPSF1-214ENST00000622776 DYMQ7RTS9 669 aa25.65■■□□□ 1.7
CPSF1-214ENST00000622776 DCP1BQ8IZD4 617 aaKnown RBP25.65■■□□□ 1.7
CPSF1-214ENST00000622776 CMTM8Q8IZV2 173 aa25.65■■□□□ 1.7
CPSF1-214ENST00000622776 HVCN1Q96D96 273 aa25.65■■□□□ 1.7
CPSF1-214ENST00000622776 SEMA4GQ9NTN9 838 aa25.65■■□□□ 1.7
CPSF1-214ENST00000622776 TCHHQ07283 1943 aa25.65■■□□□ 1.7
CPSF1-214ENST00000622776 PPP1R37O75864 691 aa25.64■■□□□ 1.7
CPSF1-214ENST00000622776 IL18RAPO95256 599 aa25.64■■□□□ 1.7
CPSF1-214ENST00000622776 USP49Q70CQ1 688 aa25.64■■□□□ 1.7
CPSF1-214ENST00000622776 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.64■■□□□ 1.7
CPSF1-214ENST00000622776 TMEM150AQ86TG1 271 aa25.64■■□□□ 1.7
CPSF1-214ENST00000622776 NT5DC4Q86YG4 428 aa25.64■■□□□ 1.7
CPSF1-214ENST00000622776 NETO1Q8TDF5 533 aa25.64■■□□□ 1.7
CPSF1-214ENST00000622776 EPSTI1Q96J88 318 aa25.64■■□□□ 1.7
CPSF1-214ENST00000622776 PCDHB5Q9Y5E4 795 aa25.64■■□□□ 1.7
CPSF1-214ENST00000622776 ATG2BQ96BY7 2078 aa25.64■■□□□ 1.69
CPSF1-214ENST00000622776 F11P03951 625 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 HMGA1P17096 107 aaKnown RBP25.63■■□□□ 1.69
CPSF1-214ENST00000622776 HOXC13P31276 330 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 NLRP12P59046 1061 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 PTPAQ15257 358 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 CSRP2Q16527 193 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 CEP68Q76N32 757 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 MAB21L3Q8N8X9 362 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 ZNF560Q96MR9 790 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 FAM83CQ9BQN1 747 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 STRA6Q9BX79 667 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 TMLHEQ9NVH6 421 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 KIF26AQ9ULI4 1882 aaPredicted RBP25.63■■□□□ 1.69
CPSF1-214ENST00000622776 SPAG17Q6Q759 2223 aa25.63■■□□□ 1.69
CPSF1-214ENST00000622776 LOC105378220A0A1B0GUY1 285 aaPredicted RBP25.62■■□□□ 1.69
CPSF1-214ENST00000622776 SLC30A4O14863 429 aa25.62■■□□□ 1.69
CPSF1-214ENST00000622776 AVPR1AP37288 418 aa25.62■■□□□ 1.69
CPSF1-214ENST00000622776 PNPLA4P41247 253 aa25.62■■□□□ 1.69
CPSF1-214ENST00000622776 TSPY1Q01534 308 aa25.62■■□□□ 1.69
CPSF1-214ENST00000622776 PRR23CQ6ZRP0 262 aa25.62■■□□□ 1.69
CPSF1-214ENST00000622776 WDR5BQ86VZ2 330 aa25.62■■□□□ 1.69
CPSF1-214ENST00000622776 CNTNAP3BQ96NU0 1288 aa25.62■■□□□ 1.69
CPSF1-214ENST00000622776 CNTNAP3Q9BZ76 1288 aa25.62■■□□□ 1.69
CPSF1-214ENST00000622776 SEL1LQ9UBV2 794 aa25.62■■□□□ 1.69
CPSF1-214ENST00000622776 STK17AQ9UEE5 414 aa25.62■■□□□ 1.69
CPSF1-214ENST00000622776 CCL26Q9Y258 94 aa25.62■■□□□ 1.69
CPSF1-214ENST00000622776 EXTL3O43909 919 aa25.61■■□□□ 1.69
CPSF1-214ENST00000622776 PRPF40AO75400 957 aaKnown RBP25.61■■□□□ 1.69
CPSF1-214ENST00000622776 DDX6P26196 483 aaKnown RBP eCLIP25.61■■□□□ 1.69
CPSF1-214ENST00000622776 KCNA1Q09470 495 aa25.61■■□□□ 1.69
CPSF1-214ENST00000622776 FAM160A2Q8N612 972 aaPredicted RBP25.61■■□□□ 1.69
CPSF1-214ENST00000622776 USP13Q92995 863 aaPredicted RBP25.61■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms