RNA–Protein interactions for RNA: ENST00000621271.4

CLTCL1-211, Transcript of clathrin heavy chain like 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLTCL1, Length 5,313 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-211ENST00000621271 SNF8Q96H20 258 aa10.24□□□□□ -0.77
CLTCL1-211ENST00000621271 ASCC2Q9H1I8 757 aaPredicted RBP10.24□□□□□ -0.77
CLTCL1-211ENST00000621271 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.24□□□□□ -0.77
CLTCL1-211ENST00000621271 SCOCQ9UIL1 159 aa10.24□□□□□ -0.77
CLTCL1-211ENST00000621271 TBX20Q9UMR3 447 aa10.24□□□□□ -0.77
CLTCL1-211ENST00000621271 ZSCAN9O15535 394 aaPredicted RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 APRTP07741 180 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 LHX1P48742 406 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 ESRRGP62508 458 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 MDM2Q00987 491 aaPredicted RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 PDE1CQ14123 709 aaPredicted RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 FSCN1Q16658 493 aaKnown RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 NYAP1Q6ZVC0 841 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 TAGAPQ8N103 731 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 C1orf54Q8WWF1 131 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 CLMNQ96JQ2 1002 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 C7orf25Q9BPX7 421 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 KIAA1683Q9H0B3 1180 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 SPACA6W5XKT8 324 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 ZBTB22O15209 634 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 MAPK13O15264 365 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 EFCAB14O75071 495 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 ARIH2O95376 493 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 AARSP49588 968 aaKnown RBP eCLIP10.23□□□□□ -0.773e-6■■■■■ 61.8
CLTCL1-211ENST00000621271 EFTUD2Q15029 972 aaKnown RBP eCLIP10.23□□□□□ -0.773e-6■■■■■ 41.9
CLTCL1-211ENST00000621271 PPM1LQ5SGD2 360 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 IZUMO3Q5VZ72 239 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 NFRKBQ6P4R8 1299 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 PDXDC1Q6P996 788 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 GSPT2Q8IYD1 628 aaKnown RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 ADGRF2Q8IZF7 708 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 GMCL1Q96IK5 515 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 NFKBIZQ9BYH8 718 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 RUBCNLQ9H714 662 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 PKD2L2Q9NZM6 624 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 AKAP7Q9P0M2 348 aaPredicted RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 VPS28Q9UK41 221 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 MSH4O15457 936 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 GARTP22102 1010 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 MFSD10Q14728 455 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 HIST2H2ACQ16777 129 aaPredicted RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 ZNF284Q2VY69 593 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 HIST2H2AA3Q6FI13 130 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 CCDC137Q6PK04 289 aaKnown RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 CNPY4Q8N129 248 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 GMCL1P1Q8NEA9 526 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 HPS3Q969F9 1004 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 SLC13A1Q9BZW2 595 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 MRPL40Q9NQ50 206 aaKnown RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 CCDC78A2IDD5 438 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 GMNCA6NCL1 334 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 GTF2H1P32780 548 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 CAPZA2P47755 286 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 MRPS25P82663 173 aaKnown RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 EXOSC10Q01780 885 aaKnown RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 GRIK4Q16099 956 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 EDRF1Q3B7T1 1238 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 HSP90AA5PQ58FG0 334 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 NUGGCQ68CJ6 796 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 STOX1Q6ZVD7 989 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 PHACTR4Q8IZ21 702 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 P2RX7Q99572 595 aaKnown RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 PITPNM3Q9BZ71 974 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 PXMP2Q9NR77 195 aa10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.23□□□□□ -0.777e-7■■■■■ 41.8
CLTCL1-211ENST00000621271 CDV3Q9UKY7 258 aaKnown RBP10.23□□□□□ -0.77
CLTCL1-211ENST00000621271 QRICH2Q9H0J4 1663 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 DDTLA6NHG4 134 aaPredicted RBP10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 TEX33O43247 280 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 DYRK3O43781 588 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 DIAPH2O60879 1101 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 PDIA6Q15084 440 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 HIF1AQ16665 826 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 ZC3H12BQ5HYM0 836 aaKnown RBP10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 EPM2AIP1Q7L775 607 aaPredicted RBP10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 SYT2Q8N9I0 419 aaPredicted RBP10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 NKX2-3Q8TAU0 364 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 CDK5RAP1Q96SZ6 601 aaKnown RBP10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 KIF17Q9P2E2 1029 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 PITPNM2Q9BZ72 1349 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 CCDC195A0A1B0GUA6 201 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 M0QYT0 321 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 PCDH8O95206 1070 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 CHRM3P20309 590 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 OXCT1P55809 520 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 ERVK-9P63128 1117 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 ERVK-24P63145 666 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 HPCAP84074 193 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 TTLL9Q3SXZ7 439 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 TRAPPC11Q7Z392 1133 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 DNAJB3Q8WWF6 145 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 CD274Q9NZQ7 290 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 SLC39A10Q9ULF5 831 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 VPS9D1Q9Y2B5 631 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 A0A1W2PQC6 194 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 SLC12A8A0AV02 714 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 CASTOR2A6NHX0 329 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 TRIM66O15016 1216 aa10.22□□□□□ -0.77
CLTCL1-211ENST00000621271 KIF1CO43896 1103 aaKnown RBP10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms