RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CALCAP01258 141 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 CACNA2D1P54289 1103 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 NOP14P78316 857 aaKnown RBP14.45□□□□□ -0.1
LINC00540-202ENST00000616974 TYRO3Q06418 890 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 KRT39Q6A163 491 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 GPR65Q8IYL9 337 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 CRACR2AQ9BSW2 395 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 ZCWPW1Q9H0M4 648 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 CEP72Q9P209 647 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 SSX2IPQ9Y2D8 614 aa14.45□□□□□ -0.1
LINC00540-202ENST00000616974 F5P12259 2224 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 ZMYND10O75800 440 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 CD58P19256 250 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 FMO5P49326 533 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 KCNH2Q12809 1159 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 GPR17Q13304 367 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 SMAD4Q13485 552 aaKnown RBP14.44□□□□□ -0.1
LINC00540-202ENST00000616974 CBX2Q14781 532 aaPredicted RBP14.44□□□□□ -0.1
LINC00540-202ENST00000616974 NFKBIBQ15653 356 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 SMAD2Q15796 467 aaKnown RBP14.44□□□□□ -0.1
LINC00540-202ENST00000616974 PTPN21Q16825 1174 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 SLC5A9Q2M3M2 681 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 KLHL40Q2TBA0 621 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 GRASPQ7Z6J2 395 aaPredicted RBP14.44□□□□□ -0.1
LINC00540-202ENST00000616974 PPFIBP1Q86W92 1011 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 TOP6BLQ8N6T0 577 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 LMO3Q8TAP4 145 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 ADAMTS19Q8TE59 1207 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 FUCA2Q9BTY2 467 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 ABI2Q9NYB9 513 aaPredicted RBP14.44□□□□□ -0.1
LINC00540-202ENST00000616974 H7C4K7 107 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 CLDN5O00501 218 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 NCK2O43639 380 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 ATF6P18850 670 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 CYP2F1P24903 491 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 CCR2P41597 374 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 ZNF667Q5HYK9 610 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 FRMD5Q7Z6J6 570 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 HS6ST3Q8IZP7 471 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 C12orf29Q8N999 325 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 OR6B3Q8NGW1 331 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 COL25A1Q9BXS0 654 aaPredicted RBP14.44□□□□□ -0.1
LINC00540-202ENST00000616974 NFE2L3Q9Y4A8 694 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 INSL5Q9Y5Q6 135 aa14.44□□□□□ -0.1
LINC00540-202ENST00000616974 GJA1P17302 382 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 TNNC1P63316 161 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 TWF1Q12792 350 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 NCAPHQ15003 741 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 ANO6Q4KMQ2 910 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 ZNF394Q53GI3 561 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 GJB7Q6PEY0 223 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 GPR149Q86SP6 731 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 FBXL13Q8NEE6 735 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 WHAMMQ8TF30 809 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 SMG7Q92540 1137 aaKnown RBP14.43□□□□□ -0.1
LINC00540-202ENST00000616974 TCEAL4Q96EI5 215 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 RPGRIP1Q96KN7 1286 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 VRTNQ9H8Y1 702 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 SFXN1Q9H9B4 322 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 RAB20Q9NX57 234 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 DNMT3BQ9UBC3 853 aaKnown RBP14.43□□□□□ -0.1
LINC00540-202ENST00000616974 AFF4Q9UHB7 1163 aaKnown RBP14.43□□□□□ -0.1
LINC00540-202ENST00000616974 YIPF1Q9Y548 306 aa14.43□□□□□ -0.1
LINC00540-202ENST00000616974 PRRG1O14668 218 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 MARSP56192 900 aaKnown RBP14.42□□□□□ -0.1
LINC00540-202ENST00000616974 MTMR3Q13615 1198 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 INTS6LQ5JSJ4 861 aaKnown RBP14.42□□□□□ -0.1
LINC00540-202ENST00000616974 TJAP1Q5JTD0 557 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 MIIPQ5JXC2 388 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 ARHGEF19Q8IW93 802 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 SYAP1Q96A49 352 aaPredicted RBP14.42□□□□□ -0.1
LINC00540-202ENST00000616974 SEPT5Q99719 369 aaPredicted RBP14.42□□□□□ -0.1
LINC00540-202ENST00000616974 SYT15Q9BQS2 421 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 PRKD2Q9BZL6 878 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 SMOC2Q9H3U7 446 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 PLEKHA4Q9H4M7 779 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 FANCLQ9NW38 375 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 AJAP1Q9UKB5 411 aaPredicted RBP14.42□□□□□ -0.1
LINC00540-202ENST00000616974 R3HCC1Q9Y3T6 440 aaKnown RBP14.42□□□□□ -0.1
LINC00540-202ENST00000616974 OR6C75A6NL08 312 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 STAU1O95793 577 aaKnown RBP14.42□□□□□ -0.1
LINC00540-202ENST00000616974 WARSP23381 471 aaKnown RBP14.42□□□□□ -0.1
LINC00540-202ENST00000616974 GNL1P36915 607 aaPredicted RBP14.42□□□□□ -0.1
LINC00540-202ENST00000616974 PPP1R2P41236 205 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 NDST1P52848 882 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 CREMQ03060 361 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 ZP2Q05996 745 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 DDR2Q16832 855 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 SGSM1Q2NKQ1 1148 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 MDH1BQ5I0G3 518 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 LIN9Q5TKA1 542 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 PDXDC1Q6P996 788 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 SASS6Q6UVJ0 657 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 ACOT1Q86TX2 421 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 METTL23Q86XA0 190 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 TCEAL8Q8IYN2 117 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 ITFG1Q8TB96 612 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 GIPC2Q8TF65 315 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 ING5Q8WYH8 240 aa14.42□□□□□ -0.1
LINC00540-202ENST00000616974 PCED1BQ96HM7 432 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms