RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 U2AF2P26368 475 aaKnown RBP eCLIP6.81□□□□□ -1.32
CUX1-220ENST00000607092 RDXP35241 583 aaKnown RBP6.81□□□□□ -1.32
CUX1-220ENST00000607092 PNPLA4P41247 253 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 RAP1GAPP47736 663 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 LILRA4P59901 499 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 RPL10AP62906 217 aaKnown RBP6.81□□□□□ -1.32
CUX1-220ENST00000607092 TSPY1Q01534 308 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 GAS6Q14393 721 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 ZNF268Q14587 947 aaPredicted RBP6.81□□□□□ -1.32
CUX1-220ENST00000607092 PON2Q15165 354 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 ZBTB6Q15916 424 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 TMEM196Q5HYL7 178 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 SPATA1Q5VX52 437 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 ARL6IP4Q66PJ3 421 aaKnown RBP6.81□□□□□ -1.32
CUX1-220ENST00000607092 LMBRD2Q68DH5 695 aaPredicted RBP6.81□□□□□ -1.32
CUX1-220ENST00000607092 RNF43Q68DV7 783 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 SLFN12LQ6IEE8 588 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 C1orf186Q6ZWK4 172 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 SKAP1Q86WV1 359 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 CMTM8Q8IZV2 173 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 DAW1Q8N136 415 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 CPA6Q8N4T0 437 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 KIAA1958Q8N8K9 716 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 TMEM161BQ8NDZ6 487 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 SENP8Q96LD8 212 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 AK8Q96MA6 479 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 CEP295NLQ96MC4 621 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 LRRC3Q9BY71 257 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 ARRDC1-AS1Q9H2J1 176 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 TDP1Q9NUW8 608 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 GTSE1Q9NYZ3 720 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 EHD2Q9NZN4 543 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 R3HCC1Q9Y3T6 440 aaKnown RBP6.81□□□□□ -1.32
CUX1-220ENST00000607092 C2CD2Q9Y426 696 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 ZZEF1O43149 2961 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 CFAP47Q6ZTR5 3102 aa6.81□□□□□ -1.32
CUX1-220ENST00000607092 SETXQ7Z333 2677 aaKnown RBP6.8□□□□□ -1.32
CUX1-220ENST00000607092 E9PMD0 336 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 WNT7AO00755 349 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 GDF9O60383 454 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 JAK2O60674 1132 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 ALDH1A2O94788 518 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 KCNK5O95279 499 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 APBB3O95704 486 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 BMP15O95972 392 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 PIGRP01833 764 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 ADRB2P07550 413 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 CXCL8P10145 99 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 GJA1P17302 382 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 PFKLP17858 780 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 CDC25AP30304 524 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 MPLP40238 635 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 SOX9P48436 509 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 TAF6P49848 677 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 NCKAP1LP55160 1127 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 GUCY1B3Q02153 619 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 MAPK7Q13164 816 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 RUNX3Q13761 415 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 BYSLQ13895 437 aaKnown RBP6.8□□□□□ -1.32
CUX1-220ENST00000607092 TMEM132DQ14C87 1099 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 POSTNQ15063 836 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 ECM1Q16610 540 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 MGAT5BQ3V5L5 792 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 SV2CQ496J9 727 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 USP39Q53GS9 565 aaKnown RBP6.8□□□□□ -1.32
CUX1-220ENST00000607092 PLA2G2CQ5R387 149 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 HYIQ5T013 277 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 N4BP2L1Q5TBK1 243 aaPredicted RBP6.8□□□□□ -1.32
CUX1-220ENST00000607092 RALGAPA1Q6GYQ0 2036 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 TXNDC11Q6PKC3 985 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 Q6ZS52 159 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 GAREM2Q75VX8 874 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 SYT13Q7L8C5 426 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 TAS1R3Q7RTX0 852 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 MON1AQ86VX9 555 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 HOMEZQ8IX15 550 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 SYT2Q8N9I0 419 aaPredicted RBP6.8□□□□□ -1.32
CUX1-220ENST00000607092 FSIP1Q8NA03 581 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 ATAD1Q8NBU5 361 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 SPATA18Q8TC71 538 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 ATP2A3Q93084 1043 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 CALML4Q96GE6 196 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 ZNF560Q96MR9 790 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 PGLYRP2Q96PD5 576 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 SEPT5Q99719 369 aaPredicted RBP6.8□□□□□ -1.32
CUX1-220ENST00000607092 P2RY13Q9BPV8 354 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 FAM83CQ9BQN1 747 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 RUSC1Q9BVN2 902 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 LSM14BQ9BX40 385 aaKnown RBP6.8□□□□□ -1.32
CUX1-220ENST00000607092 HELZ2Q9BYK8 2649 aaKnown RBP6.8□□□□□ -1.32
CUX1-220ENST00000607092 CCSER1Q9C0I3 900 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 DNAJC25Q9H1X3 360 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 TMEM206Q9H813 350 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 PARVGQ9HBI0 331 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 ABCB6Q9NP58 842 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 GKN1Q9NS71 199 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 RBM12Q9NTZ6 932 aaKnown RBP6.8□□□□□ -1.32
CUX1-220ENST00000607092 TUBGCP4Q9UGJ1 667 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 EBF1Q9UH73 591 aa6.8□□□□□ -1.32
CUX1-220ENST00000607092 SLC27A5Q9Y2P5 690 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms