RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ASPAP45381 313 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 TRPC3Q13507 836 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 SLC39A12Q504Y0 691 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 INTS6LQ5JSJ4 861 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 PPM1LQ5SGD2 360 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 LIN9Q5TKA1 542 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 CES5AQ6NT32 575 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 FAM171BQ6P995 826 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 POTEHQ6S545 545 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 TRIM59Q8IWR1 403 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 SMG7Q92540 1137 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 NECTIN4Q96NY8 510 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 SRRTQ9BXP5 876 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 DNAJC25Q9H1X3 360 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 CYP4F11Q9HBI6 524 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 WDR6Q9NNW5 1121 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 CRTAC1Q9NQ79 661 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 ARMCX3Q9UH62 379 aaPredicted RBP20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 FAM50BQ9Y247 325 aa20.9■□□□□ 0.94
SHKBP1-221ENST00000599833 CCL16O15467 120 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 PHACTR2O75167 634 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 ATP2C2O75185 946 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 MXI1P50539 228 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 CDR1P51861 262 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 CDH8P55286 799 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 NTHL1P78549 312 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 DUSP4Q13115 394 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 SGSM1Q2NKQ1 1148 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 ATAT1Q5SQI0 421 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 KRT39Q6A163 491 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 CCDC149Q6ZUS6 474 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 THEM5Q8N1Q8 247 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 TAF4BQ92750 862 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 RIPOR3Q96MK2 946 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 BCO2Q9BYV7 579 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 MMRN2Q9H8L6 949 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 METTL14Q9HCE5 456 aaKnown RBP20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 HCFC1R1Q9NWW0 138 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 DNMT3BQ9UBC3 853 aaKnown RBP20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 YIPF1Q9Y548 306 aa20.89■□□□□ 0.93
SHKBP1-221ENST00000599833 GREB1Q4ZG55 1949 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 MYBPHLA2RUH7 354 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 PMM2O15305 246 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 PIK3CAP42336 1068 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 RAP1GAPP47736 663 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 LHX1P48742 406 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 DCAF17Q5H9S7 520 aaPredicted RBP20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 CCDC183Q5T5S1 534 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 KHSRPQ92945 711 aaKnown RBP eCLIP20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 MMS19Q96T76 1030 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 LPIN3Q9BQK8 851 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 DPEP3Q9H4B8 488 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 CEP72Q9P209 647 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 HSFX1Q9UBD0 423 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 NXF1Q9UBU9 619 aaKnown RBP20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 SLC27A5Q9Y2P5 690 aa20.88■□□□□ 0.93
SHKBP1-221ENST00000599833 CLUHO75153 1309 aa20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 SOAT2O75908 522 aa20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 ATF6P18850 670 aa20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 ERCC5P28715 1186 aaPredicted RBP20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 ZNF667Q5HYK9 610 aa20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 ELMSAN1Q6PJG2 1045 aa20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 GRASPQ7Z6J2 395 aaPredicted RBP20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 LMO3Q8TAP4 145 aa20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 LRRC3Q9BY71 257 aa20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 HMGXB4Q9UGU5 601 aa20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 GTF3C4Q9UKN8 822 aa20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 MYO10Q9HD67 2058 aa20.87■□□□□ 0.93
SHKBP1-221ENST00000599833 C2CD4DB7Z1M9 353 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 FMO5P49326 533 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 PSMC1P62191 440 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 TNNC1P63316 161 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 NOP14P78316 857 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 MYL7Q01449 175 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 TWF1Q12792 350 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 SLC5A9Q2M3M2 681 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 SCARA5Q6ZMJ2 495 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 FBXL13Q8NEE6 735 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 AVENQ9NQS1 362 aaPredicted RBP20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 RAB20Q9NX57 234 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 CDH9Q9ULB4 789 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 R3HCC1Q9Y3T6 440 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 DENND4CQ5VZ89 1909 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 OBSL1O75147 1896 aa20.86■□□□□ 0.93
SHKBP1-221ENST00000599833 PRRG1O14668 218 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 MOSPD3O75425 235 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 HAPLN1P10915 354 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 ELF1P32519 619 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 GNL1P36915 607 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 CCR2P41597 374 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 EPHA5P54756 1037 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 SMARCB1Q12824 385 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 CCDC40Q4G0X9 1142 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 CT47A1Q5JQC4 288 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 PRSS36Q5K4E3 855 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 TCERG1LQ5VWI1 586 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 C11orf57Q6ZUT1 292 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 TMC8Q8IU68 726 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 GJD3Q8N144 294 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms