RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MGAT5BQ3V5L5 792 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 SEZ6Q53EL9 994 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 USP39Q53GS9 565 aaKnown RBP11□□□□□ -0.65
TRIM28-210ENST00000597618 TRIM68Q6AZZ1 485 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 DAW1Q8N136 415 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 CPA6Q8N4T0 437 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 CCDC26Q8TAB7 109 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 SLC32A1Q9H598 525 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 KIAA1024Q9UPX6 916 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 CCL26Q9Y258 94 aa11□□□□□ -0.65
TRIM28-210ENST00000597618 KIF26AQ9ULI4 1882 aaPredicted RBP11□□□□□ -0.65
TRIM28-210ENST00000597618 CITO14578 2027 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 FLNBO75369 2602 aaKnown RBP10.99□□□□□ -0.65
TRIM28-210ENST00000597618 TTC26A0AVF1 554 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 CDX4O14627 284 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-210ENST00000597618 SLC16A4O15374 487 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 CLDN3O15551 220 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 CLTAP09496 248 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 ARSAP15289 507 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 FXR2P51116 673 aaKnown RBP eCLIP10.99□□□□□ -0.653e-11■■■□□ 18.4
TRIM28-210ENST00000597618 GALK1P51570 392 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 DGKEP52429 567 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 PPP2R3AQ06190 1150 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 SPAG1Q07617 926 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 MCL1Q07820 350 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 LMAN2Q12907 356 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 SAFBQ15424 915 aaKnown RBP eCLIP10.99□□□□□ -0.65
TRIM28-210ENST00000597618 ZBTB6Q15916 424 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 UAP1L1Q3KQV9 507 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 SLC39A12Q504Y0 691 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 KIAA1211LQ6NV74 962 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 ZPBP2Q6X784 338 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 DEFB124Q8NES8 71 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 TSTD1Q8NFU3 115 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 OR10T2Q8NGX3 314 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 C2orf15Q8WU43 125 aaKnown RBP10.99□□□□□ -0.65
TRIM28-210ENST00000597618 USP13Q92995 863 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-210ENST00000597618 ZBTB45Q96K62 511 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-210ENST00000597618 TSPAN18Q96SJ8 248 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 TIPINQ9BVW5 301 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 FBRSL1Q9HCM7 1045 aaKnown RBP10.99□□□□□ -0.65
TRIM28-210ENST00000597618 DDX19AQ9NUU7 478 aaKnown RBP10.99□□□□□ -0.65
TRIM28-210ENST00000597618 TDP1Q9NUW8 608 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 LRWD1Q9UFC0 647 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 EVLQ9UI08 416 aaPredicted RBP10.99□□□□□ -0.65
TRIM28-210ENST00000597618 TBX20Q9UMR3 447 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 MSRB2Q9Y3D2 182 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 STK24Q9Y6E0 443 aa10.99□□□□□ -0.65
TRIM28-210ENST00000597618 EML5Q05BV3 1969 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 TAF4O00268 1085 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 HYAL3O43820 417 aaPredicted RBP10.98□□□□□ -0.65
TRIM28-210ENST00000597618 U2AF2P26368 475 aaKnown RBP eCLIP10.98□□□□□ -0.65
TRIM28-210ENST00000597618 GJA4P35212 333 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 MATR3P43243 847 aaKnown RBP eCLIP10.98□□□□□ -0.65
TRIM28-210ENST00000597618 FOSBP53539 338 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 LILRA4P59901 499 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 SMARCB1Q12824 385 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 MAPK7Q13164 816 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 ZNF268Q14587 947 aaPredicted RBP10.98□□□□□ -0.65
TRIM28-210ENST00000597618 ZNF174Q15697 407 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 KYAT1Q16773 422 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 TMEM130Q8N3G9 435 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 MAB21L3Q8N8X9 362 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 NSUN7Q8NE18 718 aaKnown RBP10.98□□□□□ -0.65
TRIM28-210ENST00000597618 SNX29Q8TEQ0 813 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 SPIRE2Q8WWL2 714 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 CD101Q93033 1021 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 GTF3C6Q969F1 213 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 SENP8Q96LD8 212 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 CNOT6LQ96LI5 555 aaKnown RBP10.98□□□□□ -0.65
TRIM28-210ENST00000597618 NTPCRQ9BSD7 190 aaKnown RBP10.98□□□□□ -0.65
TRIM28-210ENST00000597618 ZCWPW1Q9H0M4 648 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 KCNG1Q9UIX4 513 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 DSEQ9UL01 958 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 DNM3Q9UQ16 869 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 CACNA1EQ15878 2313 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 IGSF10Q6WRI0 2623 aa10.98□□□□□ -0.65
TRIM28-210ENST00000597618 PATE3B3GLJ2 98 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 H0Y626 953 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 TRIM16O95361 564 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 CYP11A1P05108 521 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 MAPTP10636 758 aaKnown RBP10.97□□□□□ -0.65
TRIM28-210ENST00000597618 NMT1P30419 496 aaKnown RBP10.97□□□□□ -0.65
TRIM28-210ENST00000597618 DHPSP49366 369 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-210ENST00000597618 GUCY2FP51841 1108 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 SMTNP53814 917 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 NLRP12P59046 1061 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 IRX4P78413 519 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 PSMD2Q13200 908 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 MTF1Q14872 753 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 NAIF1Q69YI7 327 aaPredicted RBP10.97□□□□□ -0.65
TRIM28-210ENST00000597618 TMEM150AQ86TG1 271 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 RASSF3Q86WH2 238 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 NECAB1Q8N987 351 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 TMEM161BQ8NDZ6 487 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 SPPL2BQ8TCT7 592 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 GIPC2Q8TF65 315 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 PIGKQ92643 395 aa10.97□□□□□ -0.65
TRIM28-210ENST00000597618 MRPS31Q92665 395 aaKnown RBP10.97□□□□□ -0.65
TRIM28-210ENST00000597618 EZH1Q92800 747 aaPredicted RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms