RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 THEM5Q8N1Q8 247 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 TMEM86AQ8N2M4 240 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 TAS1R2Q8TE23 839 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 NELFBQ8WX92 580 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 SEMA4DQ92854 862 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 TCEAL4Q96EI5 215 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 ACBD6Q9BR61 282 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 PI4K2AQ9BTU6 479 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 LRRC3Q9BY71 257 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 SMOC2Q9H3U7 446 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 SMYD3Q9H7B4 428 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 VRTNQ9H8Y1 702 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 APOBEC3GQ9HC16 384 aaKnown RBP11.96□□□□□ -0.49
VRK3-210ENST00000596121 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.96□□□□□ -0.495e-6■■■■■ 65.2
VRK3-210ENST00000596121 USTQ9Y2C2 406 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 YIPF1Q9Y548 306 aa11.96□□□□□ -0.49
VRK3-210ENST00000596121 PSMA7O14818 248 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 PHACTR2O75167 634 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 MOSPD3O75425 235 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 LRG1P02750 347 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 RHOP08100 348 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 PDGFRBP09619 1106 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 ATF6P18850 670 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 FSHRP23945 695 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 RAP1GAPP47736 663 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 GPR15P49685 360 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 PSMC1P62191 440 aaKnown RBP11.95□□□□□ -0.5
VRK3-210ENST00000596121 FKBP3Q00688 224 aaKnown RBP11.95□□□□□ -0.5
VRK3-210ENST00000596121 LRRC63Q05C16 580 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 INTS6LQ5JSJ4 861 aaKnown RBP11.95□□□□□ -0.5
VRK3-210ENST00000596121 FAM171BQ6P995 826 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 GET4Q7L5D6 327 aaPredicted RBP11.95□□□□□ -0.5
VRK3-210ENST00000596121 DPH6Q7L8W6 267 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 TDRD5Q8NAT2 981 aaKnown RBP11.95□□□□□ -0.5
VRK3-210ENST00000596121 RSAD2Q8WXG1 361 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 MMS19Q96T76 1030 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 TSG101Q99816 390 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 MKNK1Q9BUB5 465 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 GTPBP4Q9BZE4 634 aaKnown RBP11.95□□□□□ -0.5
VRK3-210ENST00000596121 DPEP3Q9H4B8 488 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 MMRN2Q9H8L6 949 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 ZNF334Q9HCZ1 680 aaPredicted RBP11.95□□□□□ -0.5
VRK3-210ENST00000596121 C11orf16Q9NQ32 467 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 CRTAC1Q9NQ79 661 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 NXF1Q9UBU9 619 aaKnown RBP11.95□□□□□ -0.5
VRK3-210ENST00000596121 GTF3C4Q9UKN8 822 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 MAFFQ9ULX9 164 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 CTNND2Q9UQB3 1225 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 NR2E1Q9Y466 385 aa11.95□□□□□ -0.5
VRK3-210ENST00000596121 SLC16A3O15427 465 aaKnown RBP11.94□□□□□ -0.5
VRK3-210ENST00000596121 XYLBO75191 536 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 TACC1O75410 805 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 ASS1P00966 412 aaKnown RBP11.94□□□□□ -0.5
VRK3-210ENST00000596121 HAPLN1P10915 354 aaPredicted RBP11.94□□□□□ -0.5
VRK3-210ENST00000596121 KRT13P13646 458 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 PTPN2P17706 415 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 ATICP31939 592 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 ASPAP45381 313 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 LHX1P48742 406 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 ENPEPQ07075 957 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 CBWD6Q4V339 395 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 PABPC1LQ4VXU2 614 aaKnown RBP11.94□□□□□ -0.5
VRK3-210ENST00000596121 CBWD3Q5JTY5 395 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 PRSS36Q5K4E3 855 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 CBWD5Q5RIA9 395 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 OTOP3Q7RTS5 596 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 TMC8Q8IU68 726 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 TRIML1Q8N9V2 468 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 STKLD1Q8NE28 680 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 SPATA18Q8TC71 538 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 GPR152Q8TDT2 470 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 ING5Q8WYH8 240 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 SYAP1Q96A49 352 aaPredicted RBP11.94□□□□□ -0.5
VRK3-210ENST00000596121 CORO1BQ9BR76 489 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 RPP25Q9BUL9 199 aaKnown RBP11.94□□□□□ -0.5
VRK3-210ENST00000596121 EPS15L1Q9UBC2 864 aa11.94□□□□□ -0.5
VRK3-210ENST00000596121 R3HCC1Q9Y3T6 440 aaKnown RBP11.94□□□□□ -0.5
VRK3-210ENST00000596121 DCXO43602 365 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 FAM163BP0C2L3 166 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 EPB41P11171 864 aaKnown RBP11.93□□□□□ -0.5
VRK3-210ENST00000596121 LAMP2P13473 410 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 GJA1P17302 382 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 CEBPBP17676 345 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 CYP2F1P24903 491 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 GBP2P32456 591 aaPredicted RBP11.93□□□□□ -0.5
VRK3-210ENST00000596121 GNL1P36915 607 aaPredicted RBP11.93□□□□□ -0.5
VRK3-210ENST00000596121 EPHA5P54756 1037 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 TNNC1P63316 161 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 MYL7Q01449 175 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 TSPY1Q01534 308 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 STIM1Q13586 685 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 SGSM1Q2NKQ1 1148 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 ZNF699Q32M78 642 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 SDHAF4Q5VUM1 108 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 FOXR2Q6PJQ5 311 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 SCARA5Q6ZMJ2 495 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 FILIP1Q7Z7B0 1213 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 NPAS3Q8IXF0 933 aa11.93□□□□□ -0.5
VRK3-210ENST00000596121 DCP1BQ8IZD4 617 aaKnown RBP11.93□□□□□ -0.5
VRK3-210ENST00000596121 OR6B3Q8NGW1 331 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms